Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq28 282 4e-71 seq22 221 1e-52 seq27 217 1e-51 seq31 87.8 2e-12 >seq28 Length=1152636 Score = 282 bits (312), Expect = 4e-71 Identities = 585/863 (68%), Gaps = 6/863 (1%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| || |||||||||||| ||| || ||||||||||| |||||||| Sbjct 316115 GCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCA 316056 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || || ||||| ||||| || | || ||||||| || | ||||| Sbjct 316055 GTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCAT 315996 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||| || ||| | ||| ||||||||||| ||| ||||| | ||| || | Sbjct 315995 GCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAAC 315936 Query 23201 CACATAGTCTGAGCGTGAACACGTCGC-ACGTACCTGCCTTCTTCCTCGTACTTTTGGTA 23259 |||| ||| || || | |||| || | |||||| ||||||| | ||| Sbjct 315935 CACACCTCCTGCGCCTGGAT-CGTCTTGACACCGCGGCCTTCCGCCTCGTAGCGCTCGTA 315877 Query 23260 CAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCC-GGGCGATTGCATCGGACACA 23318 | | || || | | || | |||||| ||||| |||| || || | || Sbjct 315876 GAGCCGCTCGAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTC-CA 315818 Query 23319 TGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAG 23378 | || ||||| ||| ||| || || |||| || | ||||| ||||| | | Sbjct 315817 TCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACG 315758 Query 23379 CGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAA 23438 ||||||| || || ||||||||| || || ||||| ||||| |||| || | Sbjct 315757 CGTAGAAGAGGTCACGGGCGCGCTGGTCATCCTTGCCCGTGTTGCGCTTCAGCAACAGGA 315698 Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 | | || || || |||||||| |||||||| || ||||| || |||||| | |||| Sbjct 315697 AACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTAC 315638 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||||||||| || ||||| ||||| ||||||||| | || | ||||| || ||||| | Sbjct 315637 CGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTC 315578 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 |||| |||| |||| || || | || || || | |||||| || | Sbjct 315577 CGTTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACAT 315518 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | | ||| ||||| ||| ||| || |||| ||||| | ||||| || ||||||| Sbjct 315517 GCAGACCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGA 315458 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||| ||||||||||| || || | ||| |||| ||| ||||| |||||||| || | Sbjct 315457 TGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCG 315398 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGAT 23798 | || | || ||| || || || ||||||| || || | || ||||||| |||| Sbjct 315397 GGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAAGCCCATCGACATCAGAT 315338 Query 23799 TGTACGTGTCGATGGCGGCATCAATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATC 23857 ||||||| || || | | | |||| ||||| || || | |||||| ||||| Sbjct 315337 TGTACGTCTCACGCACGTTGTTGA-GATCTCTGCCGTGGATGCCAAGGGCGACACGCATA 315279 Query 23858 ATCATGTATTGAGGTCTCTCGAC 23880 | ||| | ||||| | ||| || Sbjct 315278 AACATCTGCTGAGGCCGCTCCAC 315256 Score = 109 bits (120), Expect = 5e-19 Identities = 290/434 (67%), Gaps = 13/434 (3%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 ||||||||| | ||||||||| || || ||||| ||| || || || ||||| || Sbjct 316689 GTTCACCACAGGGAACTCGCCGCTCAGCACACGGCGGACGTATATATTCGAGGTGAAGGG 316630 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||||| | || ||||| || || ||||| | ||| || ||||| ||||| || | || Sbjct 316629 TTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGACAC 316570 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 ||| || ||||| | | ||| || ||| || | || ||||| | | ||||||| Sbjct 316569 CAGCAGTGAGTTGCGTATGCCTACCTGCATGACCTTCT-CT-TTGAGGCTGGCCCAGTCC 316512 Query 22631 CACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687 || || || |||| | | || | |||||||||| | |||| | ||| || Sbjct 316511 CAGCGACCGCTGTTCGGCCGCGCGTTCTTCCACATATCGAACTGCAGAATGCCCTCGCTT 316452 Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCT-CGC 22746 ||||||||| | | | | || | |||||| || | | || || || || | || Sbjct 316451 GCCGGGCTGTCCTTGAAGGTCTTGTACGGTCCCTCCTCCTTTGCGAGCTC-CATCGACGA 316393 Query 22747 CTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGAC 22806 ||| | |||| || | || || ||||||||||| | | |||| | || ||| | | Sbjct 316392 CTCGACCGCGGCGAAGTAGATGGTCTCGAAGATCTCCGCATTCA--CCCGCTGCGCCTCC 316335 Query 22807 GC--TTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATA 22864 || || |||||| ||||| | | || | ||| || | ||||| || || | | Sbjct 316334 GCCGAGACGAACGGCAGTCGCATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGA 316275 Query 22865 CCGATCGGTCGGTT 22878 ||||| || ||||| Sbjct 316274 CCGATGGGACGGTT 316261 >seq22 Length=644210 Score = 221 bits (244), Expect = 1e-52 Identities = 511/762 (67%), Gaps = 16/762 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 ||||| || |||||| | || || ||||||| ||| || || || ||||||| | Sbjct 486414 TTTATCAAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTT 486355 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | | | | ||||| || | ||| | ||| |||||||| | || |||||||| | Sbjct 486354 GCCCAGCG--TTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCC 486297 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || ||||| | || || | || | || |||||| | | Sbjct 486296 AGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCA 486237 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 |||| ||| ||||| | | ||| | |||||||| | || || || ||| | Sbjct 486236 CAGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGA 486177 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 ||||||| |||||| | | ||||| ||| | || | ||| ||| ||| Sbjct 486176 AGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAGCAGCGCGAGC---TTCCAGGAGCGGC 486120 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTT 58034 | |||| || ||||| || || || || |||||||| || ||| |||| | | || Sbjct 486119 TGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCG-CGCTGTTC 486061 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| ||||||| ||||| |||||||| || ||||||| ||||||||| | || |||||| Sbjct 486060 TGGCTGAAGAAGCGCGGTCTGATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGC 486001 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAA 58151 |||||||| || || || || || ||||| || ||| |||| ||||| | ||| Sbjct 486000 GACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAA 485941 Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 | | |||| || ||| | |||| || || || ||||| |||||| ||||| Sbjct 485940 CTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTC 485881 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 || || || || |||||| || | || ||||| ||| ||||| | ||||| Sbjct 485880 ATCTGTGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGCGCAGTAC 485821 Query 58272 ATTGAGTTTGTTGCCGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACA 58329 |||||||| || || ||| | || || ||| ||| | ||| || |||||| Sbjct 485820 ATTGAGTTCGTCGCGGACCGGCTGCTTGTGTCG--CTGGGCGAGGAGAAGCACTACAACG 485763 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 | | | || ||||| || ||| | |||||||||| ||||||| |||||||| |||| Sbjct 485762 CAACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCG 485703 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCG 58431 | || || || |||| || || || || |||||||||| Sbjct 485702 AGAAGAAGGTGGGCGAGTACCAGAAGGCTGGTGTGATGAGCG 485661 >seq27 Length=1043456 Score = 217 bits (240), Expect = 1e-51 Identities = 510/762 (67%), Gaps = 16/762 (2%) Strand=Plus/Minus Query 57678 TTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTG 57737 ||||| || |||||| | || || ||||||| ||| || || || ||||||| | Sbjct 846011 TTTATCAAGCACGTGCTCGCTTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTT 845952 Query 57738 GTCGAAAGATTTTCACAAG--AAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTC 57795 | | | | ||||| || | ||| | ||| |||||||| | || |||||||| | Sbjct 845951 GCCCAGCG--TTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCC 845894 Query 57796 AAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGA 57855 | || || || ||| | || ||||| | || || | || | || |||||| | | Sbjct 845893 AGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCA 845834 Query 57856 AGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCA 57915 |||| ||| ||||| | | ||| | |||||||| | || || || ||| | Sbjct 845833 CAGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGA 845774 Query 57916 AGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGC 57975 ||||||| |||||| | | ||||| ||| | || | ||| ||| ||| Sbjct 845773 AGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAGCAGCGCGAGC---TTCCAGGAGCGGC 845717 Query 57976 TAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTT 58034 | |||| || ||||| || || || | |||||||| || ||| |||| | | || Sbjct 845716 TGATCGGCTTTGCCGCAGTGGAGGGCGTCTTCTTTTCCGGATCCTTCTGCG-CGCTGTTC 845658 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| ||||||| ||||| |||||||| || ||||||| ||||||||| | || |||||| Sbjct 845657 TGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGC 845598 Query 58095 GACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAA 58151 |||||||| || || || || || ||||| || ||| |||| ||||| | ||| Sbjct 845597 GACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAA 845538 Query 58152 CCGACGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTT 58211 | | |||| || ||| | |||| || || || ||||| |||||| ||||| Sbjct 845537 CTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTC 845478 Query 58212 GTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTAC 58271 || || || || |||||| || | || ||||| ||| ||||| ||||| Sbjct 845477 ATCTGTGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGAGCAGTAC 845418 Query 58272 ATTGAGTTTGTTGCCGACAGACT--TTTGCTCGAACTGATTGGAGAGCGTCATTACAACA 58329 |||||||| || || ||| | || || ||| ||| | ||| || |||||| Sbjct 845417 ATTGAGTTCGTCGCGGACCGGCTGCTTGTGTCG--CTGGGCGAGGAGAAGCACTACAACG 845360 Query 58330 CGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCG 58389 ||| | || ||||| || ||| | |||||||||| ||||||| || ||||| || | Sbjct 845359 CGACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTG 845300 Query 58390 aaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATGAGCG 58431 | || || || |||| || || || |||||||||||||| Sbjct 845299 AGAAGAAGGTGGGCGAGTACCAGAAGGCCGGCGTGATGAGCG 845258 >seq31 Length=1340778 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| |||||| | |||| || || || Sbjct 826129 CATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTGGAGGCGAG 826070 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || || | || ||||||||| ||| | ||||| ||||| Sbjct 826069 CGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 826010 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||| || || || || ||||| ||| |||| || Sbjct 826009 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGA 825974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766204977200