Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq31 86.0 4e-12 seq27 84.2 2e-11 >seq31 Length=1340778 Score = 86.0 bits (94), Expect = 4e-12 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 33577 ATGGGCGACAAGTTT-GCATCGTTCACGGCCCAGAAGGGCACGTGCGGCATGATGTACGA 33635 || |||||||| ||| ||| | ||||||| | |||||||| |||||| || Sbjct 38022 ATCGGCGACAAATTTTGCAGCCGGCACGGCCAA-AAGGGCACCAACGGCATTCAGTTTCG 37964 Query 33636 CCAGTGGGACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCA 33695 |||| ||||||||| |||| |||||| || || |||||||| ||||||||||||| Sbjct 37963 CCAGGAGGACATGCCCTTCAACCGCGACGGGGTCGTGCCGGACCTCATCATCAACCCGCA 37904 Query 33696 TGCGTTCCCCTCGCGCATGACGGT 33719 || | ||||| |||||||| || Sbjct 37903 CGCCATTCCCTCCCGCATGACAGT 37880 >seq27 Length=1043456 Score = 84.2 bits (92), Expect = 2e-11 Identities = 110/150 (73%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 22752 CTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCATATTCTGGCTGA 22810 |||||| || || || |||||| | ||||| || || || |||| | | |||||||||| Sbjct 845709 CTTTGCCGCAGTGGAGGGCGTCTTCTTTTCCGGATCCTTCTGCGCGC-TGTTCTGGCTGA 845651 Query 22811 AGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAG 22870 |||| || || ||||| |||||| |||| ||||||| | || || ||||| | Sbjct 845650 AGAAGCGCGGTCTGATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGG 845591 Query 22871 GTCTACACTGTGACTTTGCTTGTATGCTGT 22900 | |||||| ||||| || ||| |||||| Sbjct 845590 GCCTACACACGGACTTCGCGTGTCTGCTGT 845561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356233448044105