Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq22 100 3e-16 seq31 93.3 4e-14 >seq22 Length=644210 Score = 100 bits (110), Expect = 3e-16 Identities = 243/360 (68%), Gaps = 6/360 (2%) Strand=Plus/Minus Query 52705 ATGCCCGGCCTCACGTTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGAT 52764 ||||| || | ||||| ||||||||| | || ||||||||||| || | ||||| || Sbjct 486039 ATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 485980 Query 52765 TTTGCGTGTTTGTATTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCTA 52824 || |||||| || || || ||| | | || | ||| || | || | || Sbjct 485979 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTG 485920 Query 52825 GACATGTTTAAAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTA 52884 || || || || || || |||| ||| ||||| | ||||| | || || Sbjct 485919 GAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTG 485860 Query 52885 TCATTGTTGGGCATGAACGC-GACCATGATGTGCG-AGTACATCGAGTTTGTTGCGGACA 52942 || | |||||||| || || | ||||| ||| ||||||| ||||| || |||||| Sbjct 485859 CGGCTGATTGGCATGAATGCTGAGC-TGATG-GCGCAGTACATTGAGTTCGTCGCGGACC 485802 Query 52943 GACTGTTGATGCAGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTA 53002 | ||| | || ||| || || ||| |||| || || | | |||||| || | Sbjct 485801 GGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTCA 485742 Query 53003 TGAACAACATATCGCTCGAGGGCAAAACAAACTTTTTCGAGA-GACGTGTGGGCGAGTAC 53061 || | | || ||||| |||||||||||||||| ||||||| || | |||||||||||| Sbjct 485741 TGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAAGAAG-GTGGGCGAGTAC 485683 >seq31 Length=1340778 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 139536 GGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGC 139595 ||||||| || | |||| || | ||| | ||| ||||| || || ||||| || || Sbjct 825900 GGCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCG 825959 Query 139596 TCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 | |||| || || ||||| || || ||| ||||||| || ||||| || || | Sbjct 825960 AGAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCG 826019 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 | ||||| || ||||| ||| || || | | || | |||||| | | ||||| Sbjct 826020 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCA 826079 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| | | | |||||||||||||| ||| || ||||| || ||||| Sbjct 826080 CCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 826128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063782972000