Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq22 143 4e-29 seq27 122 1e-22 seq28 102 1e-16 >seq22 Length=644210 Score = 143 bits (158), Expect = 4e-29 Identities = 582/891 (65%), Gaps = 42/891 (5%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||| || || || | | Sbjct 486546 CTCTTCCCCATCCAGTACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 486487 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||||| || ||| |||| ||| ||| ||| || | || |||| | | | ||| Sbjct 486486 TGGACGGTAGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGGCGC---TGAAC 486430 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || || || | ||||| |||| | | |||||||| ||||| ||| || ||| Sbjct 486429 GACGGGGAACGGCACTTTATCAAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATC 486370 Query 125175 GTCAACGACAATCTGTTGACA-CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||| ||| ||||| | || || ||| || ||| | || |||| | || | Sbjct 486369 GTCGTCGAGAATCT-TGCCCAGCGTTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCG 486312 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||||||||| | ||||| |||||| | ||||| || | |||||| || Sbjct 486311 CGTTCTACGGATTCCAGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTAC 486252 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| || | || | | || | ||| | |||| ||| | ||| Sbjct 486251 TGGACACGTACATCACAGA-CAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACG 486193 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | || | || | || ||||| | |||| | |||||||| | | | | || Sbjct 486192 ATCCCATGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAGCAGCGCGAG- 486134 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 |||| || | ||| | | || ||||| || ||||||||||||||||| || | Sbjct 486133 CTTCCAG----GAGCGGCTGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTTTCCGGAT 486078 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || |||| | | || ||||| ||||||||||| || ||||| ||| ||||| ||| Sbjct 486077 CCTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGATTGACGTTCAGC 486019 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT----T 125584 |||||| | || || || ||||||||||||||| ||||| || ||| |||| Sbjct 486018 AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAAC 485959 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 ||||| ||| | | | ||| | | |||| | || || |||||| Sbjct 485958 TCGCA--CATC-AAGCACAAACTGCCGCGCGAGCG-CGTGCTGGAGAT---CATTGT--- 485909 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||||| |||| || |||| ||||| | || | || ||||| | ||||||| Sbjct 485908 GGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATTGG 485849 Query 125705 CATGAACTGC-AAGCTAATGTGCG-AGTACATAGAGTTTGTGGCAGATCGTCTACTGTAC 125762 |||||| ||| |||| ||| ||| ||||||| ||||| || || || || || || Sbjct 485848 CATGAA-TGCTGAGCTGATG-GCGCAGTACATTGAGTTCGTCGCGGACCGGCTGCT---T 485794 Query 125763 GAGTTGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC 125819 | || | | ||| ||| |||||||| | | |||||||| |||||| | Sbjct 485793 GTGTCGCTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTCATGGAGATG 485734 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| || || ||||| |||||||||||||| |||||||| Sbjct 485733 ATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAAGAAGGTGGGCGAGTAC 485683 >seq27 Length=1043456 Score = 122 bits (134), Expect = 1e-22 Identities = 575/890 (65%), Gaps = 40/890 (4%) Strand=Plus/Minus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||| || || || | | Sbjct 846143 CTCTTCCCCATCCAGTACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATC 846084 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 |||||||| || ||| |||| ||| ||| ||| || | || |||| | | | ||| Sbjct 846083 TGGACGGTAGAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGGCGC---TGAAC 846027 Query 125115 GAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATC 125174 || || || | ||||| |||| | | || ||||| ||||| ||| || ||| Sbjct 846026 GACGGGGAACGGCACTTTATCAAGCACGTGCTCGCTTTCTTCGCCGGGAGCGACGGCATC 845967 Query 125175 GTCAACGACAATCTGTTGACA-CGATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCGTG 125233 ||| ||| ||||| | || || ||| || ||| | || |||| | || | Sbjct 845966 GTCGTCGAGAATCT-TGCCCAGCGTTTCATGAGCGACGTGAAGGTGCCGGAGGCG-CGCG 845909 Query 125234 CTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || ||||||||||| | ||||| |||||| | ||||| || | |||||| || Sbjct 845908 CGTTCTACGGATTCCAGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTAC 845849 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAA-CACATGCTCTTTAACGCAATCGACACG 125351 | |||| |||||| || | || | | || | ||| | |||| ||| | ||| Sbjct 845848 TGGACACGTACATCACAGA-CAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACG 845790 Query 125352 GTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCG--ATGACGACAAGT 125409 | || | || | || ||||| | |||| | |||||||| | | | | || Sbjct 845789 ATCCCATGCATCCAGAAGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAGCAGCGCGAG- 845731 Query 125410 CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-T 125468 |||| || | ||| | | || ||||| || |||||| |||||||||| || | Sbjct 845730 CTTCCAG----GAGCGGCTGATCGGCTTTGCCGCAGTGGAGGGCGTCTTCTTTTCCGGAT 845675 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 || |||| | | || ||||| ||||||||||| || ||||| || ||||| ||| Sbjct 845674 CCTTCTGCGCGC-TGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTGACGTTCAGC 845616 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGT----T 125584 |||||| | || || || ||||||||||||||| ||||| || ||| |||| Sbjct 845615 AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAAC 845556 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 ||||| ||| | | | ||| | | |||| | || || |||||| Sbjct 845555 TCGCA--CATC-AAGCACAAACTGCCGCGCGAGCG-CGTGCTGGAGAT---CATTGT--- 845506 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||||| |||| || |||| ||||| | || | || ||||| | ||||||| Sbjct 845505 GGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATTGG 845446 Query 125705 CATGAACTGC-AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACG 125763 |||||| ||| |||| ||| ||||||| ||||| || || || || || || | Sbjct 845445 CATGAA-TGCTGAGCTGATGGAGCAGTACATTGAGTTCGTCGCGGACCGGCTGCT---TG 845390 Query 125764 AGTTGATTGGC---CGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 || | | ||| ||| |||||||| | | |||||||| |||||| | | Sbjct 845389 TGTCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACTTCATGGAGATGA 845330 Query 125821 TATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 | || || |||| || || ||||| || ||||||||||| |||||||| Sbjct 845329 TCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAAGAAGGTGGGCGAGTAC 845280 >seq28 Length=1152636 Score = 102 bits (112), Expect = 1e-16 Identities = 313/476 (66%), Gaps = 10/476 (2%) Strand=Plus/Plus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||||||| ||| || ||||| | |||||||| | || || ||||| || || Sbjct 315628 CAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCATGCCGAT 315687 Query 96936 GTTTTTGACTT--TATCGA-GATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGG 96992 || |||| || | | | || |||||| | | ||| || || || ||| | Sbjct 315688 GTCTTTGGTTTCCTGTTGCTGAAGCGCAACA---CGGGCAAGGATGACCAGCGCGCCCGT 315744 Query 96993 GACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGC 97052 ||| | || || || | ||| | || || |||||||||||||| ||||| | || Sbjct 315745 GACCTCTTCTACGCGTTGTGGATCCCGGACTTGTTCATGAAGCGTGTCAAAAGTGAGGGG 315804 Query 97053 TACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAG 97112 |||| || ||| ||| || ||| || || || ||| ||| ||||| | | Sbjct 315805 CGGTGGACGCTGATGGACCCTAACACGTGCCCGGGCCTCAGCGACTGCCATGGCGAGGCG 315864 Query 97113 TTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGT-GAGACGAGTCGATGC 97171 || ||| ||| | ||||||| || ||||| || |||||| || | || Sbjct 315865 TTCGAGCGGCTCTACGAGCGCTACGAGGCGGAAGGCCGCGGTGTCAAGACGA-TCCAGGC 315923 Query 97172 ACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCT 97231 | || ||||| |||||| || | ||||| | ||||| || || | ||| || Sbjct 315924 GCAGGAGGTGTGGTTTGCCATCCTGGAGTCTCAGATCGAGACGGGCGGGCCATTCATCCT 315983 Query 97232 CTACAAGGATACCGTGAATCGCAACAGCAACCA-ACGCCACTTGGGCACCATCAAGGGCT 97290 ||||||||| | || |||| ||||| | | |||||| || |||||| ||| Sbjct 315984 GTACAAGGATGCATGCAACAGCAAGTCAAACCAGAAGAACCTTGGG-ACGATCAAGTGCT 316042 Query 97291 CCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGC 97346 | || |||||||| |||||||| |||||| | || ||||| |||||||| || ||| Sbjct 316043 CGAACCTGTGCACTGAAATTGTCGAGTACACGTCGCCGGAGGAGACGGCCGTATGC 316098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058875786600