Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq28 279 5e-70 seq27 145 7e-30 seq22 143 3e-29 seq31 107 2e-18 >seq28 Length=1152636 Score = 279 bits (308), Expect = 5e-70 Identities = 966/1469 (66%), Gaps = 71/1469 (5%) Strand=Plus/Minus Query 145051 GTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGT 145110 ||||| || || || | ||||||||| || |||||| || | || | || || || Sbjct 316695 GTACTTGTTCACCACAGGGAACTCGCCGCTCAGCACACGGCGGACGTATATATTCGAGGT 316636 Query 145111 GAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTA 145170 ||||||||| ||| ||||||| ||||| || || || | ||| | ||||| |||||| Sbjct 316635 GAAGGGTTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGG 316576 Query 145171 CGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCA 145230 | ||||| | ||| ||||| | ||| || | ||| | || || || | |||| Sbjct 316575 GGACACCAGCAGTGAGTTGCGTATGCCTACCTGCATGACCTTCTCTTTGAGGCTGGCCCA 316516 Query 145231 ATCCCATAG--CGAAGT-CGGCCTCACGTCC---CACATGTCGTACTGCAAAATGCCCTC 145284 ||||| | || || ||||| | ||| | ||||| ||| |||||| ||||||||| Sbjct 316515 GTCCCAGCGACCGCTGTTCGGCCGCGCGTTCTTCCACATATCGAACTGCAGAATGCCCTC 316456 Query 145285 GCTGGCGGGGCTG-CCTTGAAAGGAACTGTAACTGCCCCAAGTT-TTGGCGAGCTCGCAA 145342 ||| || |||||| ||||||| || |||| | | ||| | || |||||||| || Sbjct 316455 GCTTGCCGGGCTGTCCTTGAA-GGTCTTGTA-CGGTCCCTCCTCCTTTGCGAGCTC-CAT 316399 Query 145343 CT-CGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGC 145401 | || ||| | ||| |||| || || |||||| || | | || | | || ||| Sbjct 316398 CGACGACTCGACCGCGGCGAAGTAGATGGTCTCGAAGATCTCCGCATTCACCCGCTGCGC 316339 Query 145402 TTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCC 145461 || | || |||||| |||| || | ||| | || ||||| ||||||| || Sbjct 316338 CTCCGCCGAGACGAACGGCAGTCGCATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACC 316279 Query 145462 CACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATT 145521 | |||||||| || | ||||||||| | ||| | ||||| || || || Sbjct 316278 AAGACCGATGGGACGGTTGCGCATGTTGCTGCGGCGCGCTGTCTCGACTGGGTAGTAGTT 316219 Query 145522 ACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATG---TGCCGCAACTT 145578 ||||| |||| || | ||| ||| | ||| || | | | | | || Sbjct 316218 GCGGTCAATAACACGGTTTAGGTTGCGCGTGATCTGCTTCGTCACGGCGTAGAGAAGCTG 316159 Query 145579 TTCAAAGTCAAAC-CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCA 145637 | || ||| || || | |||||| | || ||| | ||||| || || | Sbjct 316158 GTG---GTTGAACTCGCGCTTT-TCAACGTCGACGAAGCGCGGCAGCGCGATGGAGGCGA 316103 Query 145638 AATTACAAACTGCCGTCTCCT-CGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTG 145696 || || || |||||||||| ||||| || |||| | || || || | ||||| || Sbjct 316102 GGTTGCATACGGCCGTCTCCTCCGGCGACG-TGTACTCGACAATTTCAGTGCACAGGTTC 316044 Query 145697 CTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAG 145756 || ||||| || || || || | ||| || || |||||||| || |||||||| Sbjct 316043 GAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCATCCTTGTAC 315984 Query 145757 AGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAGTCCT 145814 || ||| | || ||||| ||||| | ||| | ||||| ||| |||| || |||| Sbjct 315983 AGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAAC--CACACCTCCT 315926 Query 145815 GCGCACGCACCTGCTGCTGGTA--GCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTC 145872 |||| | | | || || | |||||| || | ||||| | ||||||| ||| Sbjct 315925 GCGCCTGGATCGTCT--TGACACCGCGGCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTC 315868 Query 145873 AAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCA 145932 ||||| || | ||| ||| ||||| || ||| |||| || |||||||| ||| Sbjct 315867 GAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTCCATCAGCGTCCA 315808 Query 145933 TACGCCGTTGGC-GTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGTACATCA 145991 |||| | | ||||| |||| ||| ||||| || || | ||||| |||||| | | Sbjct 315807 -CCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGA 315749 Query 145992 AGTC----GCGCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCACACTA 146047 ||| |||||| | | ||||| ||| |||| ||||||| || | || | Sbjct 315748 GGTCACGGGCGCGC-TGGTCATCCT---TGCCCGTGTTGCGCTTCAGCAACAGGAAACCA 315693 Query 146048 TAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT---GCCA 146104 ||| || || ||||| || || | ||||||||||| ||| || || || || ||| Sbjct 315692 AAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCG 315633 Query 146105 CCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTG 146164 |||||||| |||| || | ||||||| |||||||||| ||| || ||| ||| | Sbjct 315632 CCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTC 315573 Query 146165 GCTACGCCGTTCGT---AG-AGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATT 146220 | |||||| || || | | || | ||||| || ||| | | || |||| Sbjct 315572 GACGTGCCGTTGGTTCCAGCAATGTA----GCTGCCGGCGGCGCGGATGTTGTGCACATG 315517 Query 146221 CACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGAT 146280 || || | |||||| | |||| || ||||||| || ||||| |||||||| Sbjct 315516 CAGACCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGAT 315457 Query 146281 GCCGTCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATC 146338 |||||| ||||| ||| ||||| | ||| | ||| |||||||||| ||| |||| | || Sbjct 315456 GCCGTCGATGCTGTCGTCCTTCG-ACGCC-ACCAGGAAGCACGAGCTCATTTGCGGCTTC 315399 Query 146339 GGCGTCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCTCAT---C 146395 || || || || ||| | || || | ||||| || || | || ||| | Sbjct 315398 GGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAA------AGCCCATCGAC 315345 Query 146396 ATCCGA---TACGTTTCGATAGCG-TCTTGA-ATGTCGTCGCCATGAATGCCCAAAGCGA 146450 ||| || ||||| || || | |||| || || ||| || ||||| | |||| Sbjct 315344 ATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTC--TGCCGTGGATGCCAAGGGCGA 315287 Query 146451 CGCGCATGAGCATGTGTTGGGGCCGCTCC 146479 | ||||| | ||| || || ||||||||| Sbjct 315286 CACGCATAAACATCTGCTGAGGCCGCTCC 315258 >seq27 Length=1043456 Score = 145 bits (160), Expect = 7e-30 Identities = 313/463 (68%), Gaps = 4/463 (1%) Strand=Plus/Minus Query 46135 AGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttt 46194 |||| ||||| ||| ||||| || | | |||||| |||||||||||||| ||| Sbjct 845741 AGCAGCGCGAGCTTCCAGGAGCGGCTGATCGGCTTTGCCGCAGTGGAGGGCGTCTTCTTT 845682 Query 46195 tCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGAC 46253 || || || ||| | || | | || || | || | | ||||| || |||| Sbjct 845681 TCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTC-TGATGCCGGGGTTGAC 845623 Query 46254 GTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTA 46313 ||| ||||||||||| || ||||||||||||||||| || |||||||| |||||||| Sbjct 845622 GTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGTCTGCT 845563 Query 46314 CTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGA 46373 || ||| | | | | | |||| || ||| ||| ||||||| || | ||| Sbjct 845562 GTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGA 845503 Query 46374 GGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCA 46432 |||||| ||| || ||||| | | ||| || ||| ||| ||| | |||| Sbjct 845502 TGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCT-TCCGGTGCGGCTGATTGGCA 845444 Query 46433 TGAACGCACAGTCAATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGC 46492 |||| || || ||| | ||||| ||||| || |||||||| ||||| ||| || Sbjct 845443 TGAATGCTGAGCTGATGGAGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTCGC 845384 Query 46493 TTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCC 46552 | | || |||||| | ||||| | || ||||| || ||| | | ||||| | Sbjct 845383 TGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACTTCATGGAGATGATCTCGC 845324 Query 46553 TGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 || |||||||||| || || || || ||| || |||||||| Sbjct 845323 TGCAGGGCAAAACGAACTTCTTTGAGAAGAAGGTGGGCGAGTA 845281 >seq22 Length=644210 Score = 143 bits (158), Expect = 3e-29 Identities = 315/464 (68%), Gaps = 6/464 (1%) Strand=Plus/Minus Query 46135 AGCACCGCGACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttt 46194 |||| ||||| ||| ||||| || | | |||||| ||||||||| |||| ||| Sbjct 486144 AGCAGCGCGAGCTTCCAGGAGCGGCTGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTT 486085 Query 46195 tCTGGCAGTTTTGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGAC 46253 || || || ||| | || | | || || | || | | ||||| || |||| Sbjct 486084 TCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTC-TGATGCCGGGATTGAC 486026 Query 46254 GTTTAGCAACGAGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTA 46313 ||| ||||||||||| || ||||||||||||||||| || |||||||| |||||||| Sbjct 486025 GTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGTCTGCT 485966 Query 46314 CTATAACACTCGCGTGCACGACAAGCTTGCGCCCGACACCGTGCTGAGCATGTTCAAGGA 46373 || ||| | | | | | |||| || ||| ||| ||||||| || | ||| Sbjct 485965 GTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGA 485906 Query 46374 GGCGGTGGCCATTGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGC-CCTGCTGGGCA 46432 |||||| ||| || ||||| | | ||| || ||| ||| ||| | |||| Sbjct 485905 TGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCT-TCCGGTGCGGCTGATTGGCA 485847 Query 46433 TGAACGCACAGTCAATGTGCG-ACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAG 46491 |||| || || ||| ||| | ||||| ||||| || |||||||| ||||| ||| | Sbjct 485846 TGAATGCTGAGCTGATG-GCGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTCG 485788 Query 46492 CTTCACCAGCCGAAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCC 46551 || | || |||||| | |||| | || ||||| || ||| | | ||||| Sbjct 485787 CTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTCATGGAGATGATCTCG 485728 Query 46552 CTGGAGGGCAAAACTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 ||| |||||||||| || || ||||| ||| || |||||||| Sbjct 485727 CTGCAGGGCAAAACAAACTTCTTCGAGAAGAAGGTGGGCGAGTA 485684 >seq31 Length=1340778 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | || |||||||| || |||||||| || Sbjct 825901 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 825960 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||||| ||||| ||||||||||| || |||| | |||||||||||||| || Sbjct 825961 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 826020 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | ||| | || ||| | | ||| | Sbjct 826021 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 826080 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| | | || || ||||| || || || ||||| ||||||||| Sbjct 826081 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 826129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012593494400