Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq22 136 8e-27 seq27 132 1e-25 seq28 91.5 3e-13 >seq22 Length=644210 Score = 136 bits (150), Expect = 8e-27 Identities = 268/390 (69%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||||||| ||| ||||| | |||||||||||| ||||| | || Sbjct 485702 TCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCAAAGGGCTGAGTT 485761 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 485762 GCGTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATG 485821 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| |||| ||||||||||||| || |||| || ||||||||| Sbjct 485822 TACTGCGCCATCAGCTCAGCATTCATGCCAATCAGCCGCACCGGAAGCGCGTCACAGATG 485881 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || |||| || || || ||| | | || || ||| | | | | ||| Sbjct 485882 AACTCGCGTTCGATGTTCACCGCATCCACAATGATCTCCAGCACGCGCTCGCGCGGCAGT 485941 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGAG-CTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| || | ||| || | || ||| || ||||||| Sbjct 485942 TTGTGCTTGATGTGCGAGTTGTACAGCAGACACGCGAAGTCCGT--GTGTAGGCCCTCGT 485999 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | || || ||||||| || || ||| | || Sbjct 486000 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAATCCCGGCATCAGACCGCGCTTCTTCAG 486057 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| |||||||| || || Sbjct 486058 CCAGAACAGCGCGCAGAAGGATCCGGAAAA 486087 >seq27 Length=1043456 Score = 132 bits (146), Expect = 1e-25 Identities = 267/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || ||||| || | ||||||| ||| ||||| | |||||||||||| ||||| | || Sbjct 845299 TCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAAGTCAAAGGGCTGAGTC 845358 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || ||||| ||||| | ||| || | || | | ||||| || || ||||| | Sbjct 845359 GCGTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATG 845418 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||||| |||| ||||||||||||| || |||| || ||||||||| Sbjct 845419 TACTGCTCCATCAGCTCAGCATTCATGCCAATCAGCCGCACCGGAAGCGCGTCACAGATG 845478 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || || |||| || || || ||| | | || || ||| | | | | ||| Sbjct 845479 AACTCGCGTTCGATGTTCACCGCATCCACAATGATCTCCAGCACGCGCTCGCGCGGCAGT 845538 Query 251803 TTGTTCTCCAGCTTTGA---GTACAGGAG-CTCGCCAA-ACTGTTGGTGCAGACCCTCGT 251857 |||| || | | || |||||| || | ||| || | || ||| || ||||||| Sbjct 845539 TTGTGCTTGATGTGCGAGTTGTACAGCAGACACGCGAAGTCCGT--GTGTAGGCCCTCGT 845596 Query 251858 CGCGACTGATGAACTCGTTGGACAGACC--CAGGCCAGGCATCACCCCACGGTTCCTGAG 251915 |||| ||||| ||||||| | || | || || ||||||| || || ||| | || Sbjct 845597 CGCGCGAGATGAGCTCGTTG--CTGAACGTCAACCCCGGCATCAGACCGCGCTTCTTCAG 845654 Query 251916 CCAGAAGATTGCGCAAAAGGATCCAGAGAA 251945 |||||| | ||||| |||||||| || || Sbjct 845655 CCAGAACAGCGCGCAGAAGGATCCGGAAAA 845684 >seq28 Length=1152636 Score = 91.5 bits (100), Expect = 3e-13 Identities = 213/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATGATGTGGAGCGTTCTAT 218573 ||||| | |||||||||||||| || ||||| || | || ||||| ||| Sbjct 894223 GACTTTGTGGACAAGGAGCTCATCCTCTTCTCCATCGCCGACTGC----GAGCGCAGTAT 894278 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 || || | | | || ||| ||||||| || || ||||||||||| || ||||| Sbjct 894279 CCCGAGTGCGATTGACGGCTTCAAGCCCGGCCAACGCAAGATCCTCTTCTCCTGCTTCAA 894338 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 ||| ||| |||| | || ||||| | ||| || | || || || || || || Sbjct 894339 GCGTAACTTGGTGAACTCTATCAAGGTGGTGCAGCTTGCCGGCTACGTCTCGGAGCACTC 894398 Query 218694 TGGCTACCATCACGGTGAGCA---GAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGA 218750 | |||||||||||| ||||| | | ||||| | || || || ||||| ||||| Sbjct 894399 CGCCTACCATCACGGCGAGCAGTCGCTTGTGCAG---ACGATCGTCGGAATGGCGCAGGA 894455 Query 218751 CTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCA---ACGGTCAGTTTGGTTCTCG 218807 || ||||| || |||||| | |||||| | || |||||||||| ||| | || Sbjct 894456 CTTCGTGGGTAGCAACAACGT---TCCGCTGCTACGCAAGGACGGTCAGTTCGGTACGCG 894512 Query 218808 TCTATTGGGTGGAAAGGA 218825 || ||||| ||||| Sbjct 894513 GCTGCACGGTGGCAAGGA 894530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836339079435