Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq31 152 9e-32 seq27 141 2e-28 seq22 141 2e-28 seq28 95.1 2e-14 seq33 87.8 3e-12 seq21 87.8 3e-12 seq10 87.8 3e-12 >seq31 Length=1340778 Score = 152 bits (168), Expect = 9e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| ||||||||||| || |||||||| || || ||| Sbjct 825902 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 825961 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || ||||| || || Sbjct 825962 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 826021 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 ||||| |||||||| || ||||| ||||| ||| |||||| ||||| ||| | || || Sbjct 826022 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTC-GCTCGCCTCCAC 826080 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | | ||| || || || || || ||||| ||||| |||||||| Sbjct 826081 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 826128 >seq27 Length=1043456 Score = 141 bits (156), Expect = 2e-28 Identities = 583/898 (65%), Gaps = 36/898 (4%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| ||||| |||||||||||||| ||| ||| |||||||| | ||||||| Sbjct 845261 TCATCACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCT 845320 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||||||||| | ||| | ||||| | | Sbjct 845321 GCAGCGAGATCATCTCCATGAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGC 845380 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| || |||||||| |||||||| |||||| || | | Sbjct 845381 CCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTACTGCTCCATCAGCTCAGCAT 845440 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||||| || ||| ||| | ||||| || ||||| || |||| || ||| Sbjct 845441 TCATGCCAATCA-GCCGCACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACC 845499 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| || ||| ||| | |||| || | | ||| |||| || || | ||| Sbjct 845500 GCATCC---ACAATGATCTCCAGCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGAG 845556 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | || | | ||| |||||||||||||| ||||| ||||||| Sbjct 845557 TTGTACAGCAGACACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTG 845616 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || || || ||||| || || || || ||||||||| | |||||||| || Sbjct 845617 CTGAACGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGAT 845676 Query 10347 CCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG-GAG 10403 ||| ||| |||||| |||||||| | || ||| || ||||| |||| | Sbjct 845677 CCG--GAAAAGAAGACGCCCTCCACTGCGGCAAAGCCGATCAGCCGCTCCTGGAAGCTCG 845734 Query 10404 CGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTC 10463 || | || | || | | ||||||| | |||||||| | | ||||||||| Sbjct 845735 CGCT-GCTCCCAATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTC 845793 Query 10464 TCGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCA 10517 | ||| || | | || ||||| | | | | |||| || | || | | || Sbjct 845794 TGGATCGCGTGCAGCAGCCGCAGCTT-CTCCTCGCTGTCT-GTGAT--GTACGTG--TCC 845847 Query 10518 AGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAAC 10577 || |||| |||||| ||| ||||| | |||| | | |||| | |||||||| Sbjct 845848 AGTAGCACAGAGTATGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAAC 845907 Query 10578 ATACGTGCCGAGGGGTCCGTGACTTC-CTC-GGCAAAGTTGTTGTTCAGGTTCTCCATCA 10635 || ||| || || | || || ||| | || | || | || ||||| | | Sbjct 845908 GCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAACGCTG--GGCAAGATTCTCGACGA 845965 Query 10636 CCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCAT 10695 | ||||| ||||| || || ||||| |||| | ||||||||| ||||| || || | | Sbjct 845966 CGATGCCGTCGCTCCCGGCGAAGAAAGCGAGCACGTGCTTGATAAAGTGCCGTTCCCCGT 846025 Query 10696 CGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCC 10755 ||||||| ||| |||||| || || | | || | || |||||| || |||| Sbjct 846026 CGTTCAG--CGCCAC-CCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCC 846082 Query 10756 AGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 ||| | | || ||||||| | | | || ||| ||||| |||||||||| Sbjct 846083 AGATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATATCGTGGTACTGGATGGGGAA 846140 >seq22 Length=644210 Score = 141 bits (156), Expect = 2e-28 Identities = 583/898 (65%), Gaps = 36/898 (4%) Strand=Plus/Plus Query 9934 TCATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCT 9993 |||| || || |||||||||||||| ||| |||||||||||| | ||||||| Sbjct 485664 TCATCACACCAGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTTTTGCCCT 485723 Query 9994 CGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAAC 10053 || || || | |||||||||||||||||| | ||| | ||||| | | Sbjct 485724 GCAGCGAGATCATCTCCATGAAGTCAAAGGGCTGAGTTGCGTTGTAGTGCTTCTCCTCGC 485783 Query 10054 CGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGT 10113 | || | | | ||||| || |||||||| |||||||| |||||| || | | Sbjct 485784 CCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCAGCAT 485843 Query 10114 TCATGCCAATCATGCGGCAGGGGATG-GCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||||||| || ||| ||| | ||||| || ||||| || |||| || ||| Sbjct 485844 TCATGCCAATCA-GCCGCACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACC 485902 Query 10173 GCTTCCTCGACGATGCTCTTTACCACG---TCAAGGGACAGCTTGTTCTCGAGCTTCGAA 10229 || ||| || ||| ||| | |||| || | | ||| |||| || || | ||| Sbjct 485903 GCATCC---ACAATGATCTCCAGCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGAG 485959 Query 10230 T---ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTG 10286 | |||| || | || | | ||| |||||||||||||| ||||| ||||||| Sbjct 485960 TTGTACAGCAGACACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTG 486019 Query 10287 GACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGAC 10346 || || || ||||| || || || || ||||||||| | |||||||| || Sbjct 486020 CTGAACGTCAATCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGAT 486079 Query 10347 CCGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAAG-GAG 10403 ||| ||| |||||| |||||||| | || ||| || ||||| |||| | Sbjct 486080 CCG--GAAAAGAAGATGCCCTCCACTGCGGCAAAGCCGATCAGCCGCTCCTGGAAGCTCG 486137 Query 10404 CGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCAGGGATCGTC 10463 || | || | || | | ||||||| | |||||||| | | ||||||||| Sbjct 486138 CGCT-GCTCCCAATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTC 486196 Query 10464 TCGATAGCCT--CGAAG----AGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCA 10517 | ||| || | | || ||||| | | | | |||| || | || | | || Sbjct 486197 TGGATCGCGTGCAGCAGCCGCAGCTT-CTCCTCGCTGTCT-GTGAT--GTACGTG--TCC 486250 Query 10518 AGGAGCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAAC 10577 || |||| |||||| ||| ||||| | |||| | | |||| | |||||||| Sbjct 486251 AGTAGCACAGAGTATGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAAC 486310 Query 10578 ATACGTGCCGAGGGGTCCGTGACTTC-CTC-GGCAAAGTTGTTGTTCAGGTTCTCCATCA 10635 || ||| || || | || || ||| | || | || | || ||||| | | Sbjct 486311 GCGCGCGCCTCCGGCACCTTCACGTCGCTCATGAAACGCTG--GGCAAGATTCTCGACGA 486368 Query 10636 CCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCAT 10695 | ||||| ||||| || || |||||| | || | ||||||||| ||||| || || | | Sbjct 486369 CGATGCCGTCGCTCCCGGCGAAGAAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGT 486428 Query 10696 CGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCC 10755 ||||||| ||| |||||| || || | | || | || |||||| || |||| Sbjct 486429 CGTTCAG--CGCCAC-CCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCC 486485 Query 10756 AGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 ||| | | || ||||||| | | | || ||| ||||| |||||||||| Sbjct 486486 AGATGCAGCTCTCCTGCTCCTTGTACTTGCGCCAGATATCGTGGTACTGGATGGGGAA 486543 >seq28 Length=1152636 Score = 95.1 bits (104), Expect = 2e-14 Identities = 389/602 (65%), Gaps = 15/602 (2%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 || || ||||| || |||| || ||||| |||||||| || | || || || || | Sbjct 316097 CATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGCAC 316038 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| || || || ||| | ||| ||| || || ||||||| || | Sbjct 316037 TTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCA-TCCTTGTACAGGAT 315979 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 | | ||| ||||||||||||||| | | || ||| ||| || || |||| | Sbjct 315978 GAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAACCACACCTCCTGCGCCTG 315919 Query 31880 GA-CGACTTTCTTCGCACGCCCCTCGGACTCGTAGCGAAGATACAGGTCCTCGTACTCCT 31938 || || ||| | | || || || | ||||||||| || || |||| || ||| Sbjct 315918 GATCGTCTTGACAC-CGCGGCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCT 315860 Query 31939 TGCCAAAGGCA-TCGGTTAGACCGGGACACTCCTTGGGGTCGAAGAGCGACCATGCGACA 31997 |||| |||| ||| | || || || ||| || ||||| | |||| ||| | Sbjct 315859 CGCCAT-GGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTCCATCAGCGTCCACCGCCCC 315801 Query 31998 TCGGCCTCTACTCGCTTCATGAACAGGTCGTTCAGCCACATCGCGTAAAACAGATTCCTG 32057 || | || ||||||||||||| ||| | ||||| |||||| || || | | | Sbjct 315800 TCACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGG 315741 Query 32058 GCGCGTTGGGTCTCCTCACCCTGGTTACGTCGGAGCAGCAGGAAGTCCATGATGTCGGGG 32117 ||||| ||| |||| ||| ||| || |||| |||||| | | || |||| Sbjct 315740 GCGCGCTGGTCATCCTTGCCCGTGTTGCGCTTCAGCAACAGGAAACCAAAGACATCGGCA 315681 Query 32118 TGGTGGGGCTCGAGGTACACGGCGAAAGATCCCTTGCG---GCGACCCCCCTGGTTTGCG 32174 || ||||||||| || |||||||| | |||||||| | || ||||||| | || Sbjct 315680 TGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACG 315621 Query 32175 TA---TGCAGATGTCGTGTCGTACACCTTCAGCATGGGTACGATGCCATCAGACTCGCCA 32231 || |||| ||| ||| | | || |||||| ||||||| || | ||| ||| Sbjct 315620 TAGCGGGCAG-TGT--TGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCG 315564 Query 32232 TTGGTCCCCTGGATCTTGGAACCACGGCCGCGAATGTCGCTCAGGTGCAGGCCGATGCCG 32291 ||||| || || | | || | |||| |||| | || ||||| || |||||| Sbjct 315563 TTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAGACCAATGCCG 315504 Query 32292 CC 32293 || Sbjct 315503 CC 315502 >seq33 Length=1414953 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 500332 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 500275 >seq21 Length=744060 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 435656 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 435713 >seq10 Length=512284 Score = 87.8 bits (96), Expect = 3e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 84463 TAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGCCCCAC 84520 |||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 479172 TAGCTCAGTCGGTAGAGCGCACGGCTCTTAACCGTGTGGTCGTGGGTTCGATCCCCAC 479229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621996790200