Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq28 342 1e-88 seq22 248 2e-60 seq27 233 4e-56 >seq28 Length=1152636 Score = 342 bits (378), Expect = 1e-88 Identities = 1046/1586 (66%), Gaps = 51/1586 (3%) Strand=Plus/Minus Query 243869 AGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG-GCCATGGT 243927 ||||||||||| || || ||| |||||||| | | | | || || ||| |||||| Sbjct 316910 AGAAAGAGGTTCAGTGATTGGGACTGGTCGATGTATTGGCCGCGGTC-GCGTGCCATGTC 316852 Query 243928 GATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGG 243987 ||| | | ||| | ||||| || | ||| ||| | ||| |||| || || Sbjct 316851 GATCAACTTGCGCTGCGGGATCTCCCACACGGTCCGGTAAAGCTCCTTTAGGTCATCTGG 316792 Query 243988 GAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 || || || ||||| | | ||| || |||| ||||| | | ||||||| | || Sbjct 316791 GATGCCGTCAATGTTGAGGATCGAACCATTGTAAGAGATGATTTCGTTGCGCATTTGCTC 316732 Query 244048 GTTCCACAGGCCCAAGCGCTCC-AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106 ||||||||||| | |||| || || ||| |||| | |||||||||| | |||| Sbjct 316731 ATTCCACAGGCC-ACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACT 316673 Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGT 244166 | || |||||| ||||| ||| | || | ||| || |||| | ||| ||| Sbjct 316672 CGCCGCTCAGCACACGGCGGACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGT 316613 Query 244167 TGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCA 244226 |||| || ||||||| ||| ||| || |||||||| ||||||||||| ||| | | Sbjct 316612 TGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTA 316553 Query 244227 CGCCGTGCCTCTGGATG-CGGAGTCT--GAGCTCGTTCCAGTCCCACATGCCCGAGAG-G 244282 ||| | ||| | ||| | ||| ||| | ||||||||| || | | Sbjct 316552 TGCC-TACCT--GCATGACCTTCTCTTTGAGGCTGGCCCAGTCCCAGCGACCGCTGTTCG 316496 Query 244283 TCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCC 244342 || |||||| |||||| || |||||||| | |||| ||| | |||||| || Sbjct 316495 GCCGCGCGTTCTT----CCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGTCC 316440 Query 244343 TCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGC 244401 | | ||||| ||| || || || || || |||| || | | |||| ||||| Sbjct 316439 TTGAAGGTCTTGTACGGTCCCTCCTCCTTTGCGAGCTC-CATCGACGACTCGACCGCGGC 316381 Query 244402 GTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTT-GCCGCAGGTGAAG 244459 | |||||||||||||||||||| | |||| ||| | |||| |||| || ||| Sbjct 316380 GAAGTAGATGGTCTCGAAGATCTCCGCATTCACC-CGCTGCGCCTCCGCCG-AGACGAAC 316323 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 || | | ||| | || ||| ||| || || ||||| || || | |||||||| | | Sbjct 316322 GGCAGTCGCATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGG 316263 Query 244520 TGTCGCTTGTTGGAGCGCATGGCT-TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTT 244578 | ||| ||||| ||| ||| || | || ||||| |||||| ||| || || Sbjct 316262 TTGCGCATGTTGCTGCGGCGCGCTGTCTCG-ACTGGGTAGTAGTTGCGGTCAATAACACG 316204 Query 244579 GTTGAGGTTGCGGGTGATCATGCGGACG--ACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 ||| |||||||| |||||| ||| || ||| || || ||||| || | ||||| Sbjct 316203 GTTTAGGTTGCGCGTGATC-TGCTT-CGTCACGGCGTAGAGAAGCTGGTGGTTGAACTCG 316146 Query 244637 TAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTG 244696 || || ||| | || | || || |||| | ||| |||||| Sbjct 316145 CGCTTTTCAACGTCGACG-----------AAGCGCGGC-AGCGCGATGGAGGCGAGGTTG 316098 Query 244697 CAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCAC 244756 || |||||| |||||||| ||||||| |||||| || ||||| ||||| |||| Sbjct 316097 CATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGCAC 316038 Query 244757 TTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||| || || |||| || || || |||||| |||||| || |||||||| || ||| Sbjct 316037 TTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCATCCTTGTACAGGATG 315978 Query 244817 AAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTG 244876 || ||||| || ||||||| ||| | | |||| | ||| | ||| |||| | Sbjct 315977 AATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAACCACACCTCCTGCGCCTGG 315918 Query 244877 ACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936 | |||| || | | ||| || ||||||||||| ||| || ||||||| | | Sbjct 315917 ATCGTCTTGACACCGCGGCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCTCG 315858 Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 || | ||| ||||| ||||||| ||| ||| || ||||| |||| | Sbjct 315857 CCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTCCATCAGCGTCCAC-CGCCCCTC 315799 Query 244997 TCCTT-GACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGT 245055 | || ||| | || |||||| | ||| |||||||| | || | ||||||||| | || Sbjct 315798 ACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGC 315739 Query 245056 CCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 | ||| || ||| ||| ||||| | ||||| || || ||||||| ||| | || Sbjct 315738 GCGCTGGTCATCCTTGCCCGTGTTGCGCTTCAGCAACAGGAAACCAAAGACATCGGCATG 315679 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCAT 245175 ||||||||| | ||||| |||| |||||| ||||| ||| |||||||| || Sbjct 315678 CCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTA 315619 Query 245176 CCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 | | || | |||||||| |||||| | || || | ||||| || |||||||| Sbjct 315618 GCGGGC-AGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGG 315560 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG----CCTAGTCCG 245290 | || |||||| ||| | | | || |||| || ||||| || | ||| Sbjct 315559 TTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTG----TGCACATGCAGACCAATGCCG 315504 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 ||||| |||| ||| | |||||| ||| | || || ||||| || |||||| Sbjct 315503 CCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTG 315444 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 || |||| | ||| ||||| ||| || || ||||| ||| ||| | |||| Sbjct 315443 TCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTG 315384 Query 245411 AACAGAGTGGGGCTGGCGTGGGTAAA 245436 || || || || |||||||||| || Sbjct 315383 AAGAGGGTTGGAGTGGCGTGGGTGAA 315358 >seq22 Length=644210 Score = 248 bits (274), Expect = 2e-60 Identities = 581/867 (67%), Gaps = 15/867 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| || ||||||| || | || || || |||||| | Sbjct 486537 ATCCAGTACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTA 486478 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | | ||| || ||| | Sbjct 486477 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGG 486418 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 || |||| || | || ||||||||||||| |||||||| ||| ||||| Sbjct 486417 CACTTTATCAAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAAT 486358 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || ||| | ||||||| || ||| || ||||||||| |||||||| ||| Sbjct 486357 CTTGCCCAGCGTTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTC 486298 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||| | || |||||| | ||||| ||| ||| | || || ||||||||||| Sbjct 486297 CAGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATC 486238 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 || || ||| ||||| | | || || ||||||| || |||||| || Sbjct 486237 ACAGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAG 486178 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||||||||| ||||| | ||||| | ||| | ||| | ||| ||| || Sbjct 486177 AAGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAG---CAGCGCGAGCTTCCAGGAGCGG 486121 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | | |||| |||| || |||||||||||||| || || ||||| | | | ||| Sbjct 486120 CTGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTC 486061 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| || ||| | |||||| ||| | || ||| ||||| |||||| | Sbjct 486060 TGGCTGAAGAAGCGCGGTCT-GATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCG 486002 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGCA 42880 |||||||| || || | |||||| || || || |||| |||| ||| ||| ||| Sbjct 486001 CGACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAACTCG---CACATCAAGCA 485945 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||| | || ||||| || | || ||||| ||| || ||| | ||||| || Sbjct 485944 CAAACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGA 485885 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 |||| || | |||| || ||| ||| | |||||||| || || ||| | Sbjct 485884 GTTCATCTGTGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGCGCA 485825 Query 43001 GTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGG-TCTCAGCCGCCTCTAC 43058 |||||| ||| |||||| |||| || | |||| | | |||| || | | |||| Sbjct 485824 GTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTC-GCTGGGCGAGGAGAAG-CACTAC 485767 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| | | ||||| ||||| ||||||| |||||| || ||||||| || ||||| Sbjct 485766 AACGCAACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTC 485707 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||| || | ||| |||||| Sbjct 485706 TTCGAGAAGAAGGTGGGCGAGTACCAG 485680 >seq27 Length=1043456 Score = 233 bits (258), Expect = 4e-56 Identities = 578/867 (67%), Gaps = 15/867 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| || ||||||| || | || || || |||||| | Sbjct 846134 ATCCAGTACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTA 846075 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | | ||| || ||| | Sbjct 846074 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGG 846015 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 || |||| || | || || |||||||||| |||||||| ||| ||||| Sbjct 846014 CACTTTATCAAGCACGTGCTCGCTTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAAT 845955 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || ||| | ||||||| || ||| || ||||||||| |||||||| ||| Sbjct 845954 CTTGCCCAGCGTTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTC 845895 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||| | || |||||| | ||||| ||| ||| | || || ||||||||||| Sbjct 845894 CAGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATC 845835 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 || || ||| ||||| | | || || ||||||| || |||||| || Sbjct 845834 ACAGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAG 845775 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||||||||| ||||| | ||||| | ||| | ||| | ||| ||| || Sbjct 845774 AAGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAG---CAGCGCGAGCTTCCAGGAGCGG 845718 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | | |||| |||| || |||||| ||||||| || || ||||| | | | ||| Sbjct 845717 CTGATCGGCTTTGCCGCAGTGGAGGGCGTCTTCTTTTCCGGATCCTTCTGCGCGCTGTTC 845658 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| || ||| | |||||| || | || ||| ||||| |||||| | Sbjct 845657 TGGCTGAAGAAGCGCGGTCT-GATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCG 845599 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGCA 42880 |||||||| || || | |||||| || || || |||| |||| ||| ||| ||| Sbjct 845598 CGACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAACTCG---CACATCAAGCA 845542 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||| | || ||||| || | || ||||| ||| || ||| | ||||| || Sbjct 845541 CAAACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGA 845482 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 |||| || | |||| || ||| ||| | |||||||| || || ||| | Sbjct 845481 GTTCATCTGTGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGAGCA 845422 Query 43001 GTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGG-TCTCAGCCGCCTCTAC 43058 |||||| ||| |||||| |||| || | |||| | | |||| || | | |||| Sbjct 845421 GTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTC-GCTGGGCGAGGAGAAG-CACTAC 845364 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| || | ||||| ||||| ||||||| |||||| || ||||||| || ||||| Sbjct 845363 AACGCGACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 845304 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 || |||||| || | ||| |||||| Sbjct 845303 TTTGAGAAGAAGGTGGGCGAGTACCAG 845277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338786851600