Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq22 111 3e-19 seq27 104 5e-17 >seq22 Length=644210 Score = 111 bits (122), Expect = 3e-19 Identities = 284/427 (67%), Gaps = 9/427 (2%) Strand=Plus/Minus Query 243334 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT- 243392 |||||||| |||||||| | || |||||| ||| ||| ||||||| || | Sbjct 486087 TTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGATTG 486028 Query 243393 -CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAG 243450 || || | |||||| ||||| |||||||||||||| ||| | |||| ||| Sbjct 486027 ACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGT- 485971 Query 243451 CTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATC 243507 || |||| || | || || |||| || || ||| || | ||||| Sbjct 485970 CTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATT 485911 Query 243508 ACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATT 243567 || || || | | |||| || ||||| || ||||| |||| ||||| ||| Sbjct 485910 GTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATT 485851 Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 |||||||| |||| || |||| |||||||| || ||||| || ||||| | | | Sbjct 485850 GGCATGAATGCTGAGCTGATGGCGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTG 485791 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 |||| || | ||||| |||||| | | | ||||||| ||| |||||| | || Sbjct 485790 TCGCTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTCATGGAGATGATC 485731 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACGCCCTGGT 243747 ||||| || || ||||| ||||||||||| ||| || | || || || ||||| Sbjct 485730 TCGCTGCAGGGCAAAACAAACTTCTTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCTGGT 485671 Query 243748 GTGATGA 243754 ||||||| Sbjct 485670 GTGATGA 485664 >seq27 Length=1043456 Score = 104 bits (114), Expect = 5e-17 Identities = 262/393 (67%), Gaps = 9/393 (2%) Strand=Plus/Minus Query 243334 TTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCT- 243392 |||||||| |||||||| | || |||||| ||| ||| ||||||| || | Sbjct 845684 TTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGGTTG 845625 Query 243393 -CGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAG 243450 || || | |||||| ||||| |||||||||||||| ||| | |||| ||| Sbjct 845624 ACGTTCAGC--AACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGT- 845568 Query 243451 CTTATGTAT---TCAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATC 243507 || |||| || | || || |||| || || ||| || | ||||| Sbjct 845567 CTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTGCTGGAGATCATT 845508 Query 243508 ACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATT 243567 || || || | | |||| || ||||| || ||||| |||| ||||| ||| Sbjct 845507 GTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATT 845448 Query 243568 GGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATC 243627 |||||||| |||| || |||| |||||||| || ||||| || ||||| | | | Sbjct 845447 GGCATGAATGCTGAGCTGATGGAGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTG 845388 Query 243628 GCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATT 243687 |||| || | ||||| |||||| | | | ||||||| ||| |||||| | || Sbjct 845387 TCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACTTCATGGAGATGATC 845328 Query 243688 TCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 ||||| || || ||||| |||||||| || ||| Sbjct 845327 TCGCTGCAGGGCAAAACGAACTTCTTTGAGAAG 845295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879505427250