Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq31 113 5e-20 seq28 109 5e-19 >seq31 Length=1340778 Score = 113 bits (124), Expect = 5e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 |||||||||| | ||||| || || | ||| || || || || |||||||| || | | Sbjct 825902 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 825961 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | ||||| | || || ||||||||||||||| | || || ||||||||||| || || Sbjct 825962 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 826021 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || || ||| || ||| | || || | || ||||| Sbjct 826022 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 826081 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | | | ||||||||||||| || || ||||| || ||||| Sbjct 826082 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 826128 >seq28 Length=1152636 Score = 109 bits (120), Expect = 5e-19 Identities = 254/379 (67%), Gaps = 7/379 (2%) Strand=Plus/Minus Query 154905 ACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTACAACAAATCACGCGCCTTTTTG 154964 || || ||||| ||||| ||||| | |||||| ||||| || | ||||| || | | Sbjct 315791 ACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGG 315732 Query 154965 TCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCATATATGTCGGCGTGCCACGGC 155024 || || |||| |||| ||||| | || ||| || | | ||||| ||||| ||| Sbjct 315731 TCATCCTTGCCCGTGTTGCGCTTCAGCAACAGGAAACCAAAGACATCGGCATGCCAGGGC 315672 Query 155025 TCTAAATATACGGCCATCGCGCCTTTGCGTTTTCCTCCT---TGATCCACGTGACGCACA 155081 || | ||| ||||| | ||||| ||||| || || || || || |||| || || Sbjct 315671 TCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCA 315612 Query 155082 CAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTGGCCGTGCCGTTGGTGCCACGT 155141 || ||| | ||||||| || |||| | | ||| | | |||||||||||| ||| Sbjct 315611 GTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCA 315552 Query 155142 ATCGCGCTGCCGCGAGCACGCGCTTTATGAACATTAACGCCCAAACCTCC-GCCGTATT- 155199 || ||||||| || || || || |||| | || | || || |||| || Sbjct 315551 ATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAGACCAATGCCGCCGGCCGCCTTG 315492 Query 155200 TAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTCCTTTGATGCTGTCTTCTTTCA 155259 ||| |||||| ||| || || ||||| || || | ||||||||| || ||| Sbjct 315491 CTGATCACGGCGCAC--TCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCG 315434 Query 155260 ACGTCAACAAGAAACACGA 155278 ||| || || ||| ||||| Sbjct 315433 ACGCCACCAGGAAGCACGA 315415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644581405400