Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq28 203 3e-47 >seq28 Length=1152636 Score = 203 bits (224), Expect = 3e-47 Identities = 498/752 (66%), Gaps = 10/752 (1%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || ||||| |||||||| || |||||| ||| || ||| ||||| |||||| Sbjct 315367 GCCACTCCAACCCTCTTCAACGCTGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTG 315426 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || || |||| |||| |||| ||| || | ||| | || ||||| || || Sbjct 315427 GTGGCGTCGAAGGACGACAGCATCGACGGCATCTACGATACGCTGAAGGAGTGCGCCGTG 315486 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||| || || || || || || | ||| ||| || | || ||| || | Sbjct 315487 ATCAGCAAGGCGGCCGGCGGCATTGGTCTGCATGTGCACAACATCCGCGCCGCCGGCAGC 315546 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| || ||||| ||||| || ||||| ||||| || ||||| || ||||||||| Sbjct 315547 TACATTGCTGGAACCAACGGCACGTCGAACGGACTCGTACCAATGCTGCGCGTCTTCAAC 315606 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| | || |||||||| |||||||| || || | | | ||||| | ||||| |||||| Sbjct 315607 AACACTGCCCGCTACGTAGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTAT 315666 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCAC-GGCAA 94250 |||||||||||||| || || || | |||| | ||| | | | ||| ||||| Sbjct 315667 CTCGAGCCCTGGCATGCCGATGTCTTTGGTTTCCTGTTGCTG-AAGCGCAACACGGGCAA 315725 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 ||| || | ||| | |||||||||||||| | ||| | || ||| | || ||||| Sbjct 315726 GGATGACCAGCGCGCCCGTGACCTCTTCTACGCGTTGTGGATCCCGGACTTGTTCATGAA 315785 Query 94311 ACGCGTCGAGAAAAACTCCG----CCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGAC 94366 || ||| |||| | | |||| || | || || || || || | Sbjct 315786 GCGTGTC----AAAAGTGAGGGGCGGTGGACGCTGATGGACCCTAACACGTGCCCGGGCC 315841 Query 94367 TGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCA 94426 | |||| ||| | || || | || | || ||||| || | ||| Sbjct 315842 TCAGCGACTGCCATGGCGAGGCGTTCGAGCGGCTCTACGAGCGCTACGAGGCGGAAGGCC 315901 Query 94427 AGGCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 | ||| || | || | || ||||| | ||| |||| ||| | | Sbjct 315902 GCGGTGTCAAGACGATCCAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCTCAGATCG 315961 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGC 94546 ||||||| ||| | |||| ||| |||||| | |||| |||||| |||||| || Sbjct 315962 AGACGGGCGGGCCATTCATCCTGTACAAGGATGCATGCAACAGCAAGTCAAACCAGAAGA 316021 Query 94547 ACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGG 94606 |||| ||| ||||||| ||||||| |||||||| || ||||||||||| || || |||| Sbjct 316022 ACCTTGGGACGATCAAGTGCTCGAACCTGTGCACTGAAATTGTCGAGTACACGTCGCCGG 316081 Query 94607 ACGAGATTGCTGTGTGTAACCTGGGCTCCATC 94638 | |||| || || || ||||| | ||||||| Sbjct 316082 AGGAGACGGCCGTATGCAACCTCGCCTCCATC 316113 Score = 132 bits (146), Expect = 5e-26 Identities = 224/319 (70%), Gaps = 18/319 (6%) Strand=Plus/Plus Query 95089 AACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAAC 95148 ||| | ||||| ||| |||||||||| || || ||||| ||||||| || ||||||||| Sbjct 316558 AACTCACTGCTGGTGTCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTCGGCAACAAC 316617 Query 95149 GAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTC 95208 |||| ||||||||||||||||| || | ||| | | || ||||| ||| || ||| Sbjct 316618 GAGTGTTTCGAACCCTTCACCTCGAATATATACGTCCGCCGTGTGCTGAGCGGCGAGTTC 316677 Query 95209 CCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGA-CAA 95267 || || | |||||| ||||| | |||||| | | | || ||||| ||| ||| Sbjct 316678 CCTGTGGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGCCTGTGGAATGAGCAA 316737 Query 95268 --GGTCAA--GAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT--CCCGCAAAT 95321 | ||| || || || || ||| || || ||| ||||| | || || Sbjct 316738 ATGCGCAACGAAATCATCTCTTA-----CAATGGTTCGATCCTCAACATTGACGGC--AT 316790 Query 95322 ACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACT 95381 || || ||| | |||| ||| ||| ||||||||||||||||||||||||| | | | Sbjct 316791 CCCAGATGACCTAAAGGAGCTTTACCGGACCGTGTGGGAGATCCCGCAGCGCAAGTTGAT 316850 Query 95382 CGAC----CACGCGGCCGC 95396 |||| |||||| |||| Sbjct 316851 CGACATGGCACGCGACCGC 316869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494722983558600