Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq28 289 3e-73 seq22 147 2e-30 seq27 143 3e-29 seq31 100 3e-16 >seq28 Length=1152636 Score = 289 bits (320), Expect = 3e-73 Identities = 976/1481 (66%), Gaps = 63/1481 (4%) Strand=Plus/Minus Query 153006 ATGAGGTCATCGATCAAGTACTGGTTGACCACTTGAAACTCGCCCGCCAACACTCGTCTC 153065 |||||||| || | ||||| ||| ||||| | |||||||| || ||| || | Sbjct 316712 ATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACTCGCCGCTCAGCACACGGCGG 316653 Query 153066 AAATATACATTGCTAGTGAAAGGTTCAAAGGATTCGTTATTGCCTAGTATTTGAGCCGTG 153125 | |||| ||| ||||| ||||| || | ||||| ||||| || || || | ||| Sbjct 316652 ACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGTG 316593 Query 153126 GTTGCGGTCGGCATGTACGCCACCAACAAAGAATTCCGCAAGCCGTGC-GCTCGAATGTC 153184 | ||||| |||||| | ||||| || || || || | ||| | || || || Sbjct 316592 GACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTATGCCTACCTGCATGACCTTC 316533 Query 153185 GTCCTTCAACGCCTG--CCAATCCCACAG--CGCCGA-CGGTGTCGCGTTC---CACATG 153236 || || | | ||| ||| ||||| | ||| | ||| ||||||| ||||| Sbjct 316532 -TCTTTGA--GGCTGGCCCAGTCCCAGCGACCGCTGTTCGGCCGCGCGTTCTTCCACATA 316476 Query 153237 TCGTACTGTAACACTCC-TCGACTGGCGGGACTGCCGGCAAACGTACTGTA-GCTGCCGT 153294 ||| |||| | | || ||| || |||| ||| | || || |||| | | || Sbjct 316475 TCGAACTGCAGAATGCCCTCGCTTGCCGGG-CTGTCCTTGAAGGTCTTGTACGGTCCCTC 316417 Query 153295 CGCGTTGGGCCAGTTCGCAGCTA-GCCTCGAGCGCGCCATAGTATATGGTTTCGGCGATT 153353 | | || | | || || || | | | ||||| |||| | |||| ||||| ||| ||| Sbjct 316416 CTCCTTTG-CGAGCTC-CATCGACGACTCGACCGCGGCGAAGTAGATGGTCTCGAAGATC 316359 Query 153354 TGTTTATTGAGAACGGCCGCTTCTTCGCTCT--CGTACGGCATGCGCAGCAGCACAAAGG 153411 | ||| | | || || || ||| || |||||| |||| || | ||||| Sbjct 316358 TCCGCATTCAC--CCGCTGCGCCTCCGCCGAGACGAACGGCAGTCGCATGAGGATAAAGG 316301 Query 153412 CGTCGGCCAGACCCTGGATACCGACGCCGATGGGTCGATGCTTCTCGTTGCTGCGCCTCG 153471 ||| || || ||||| | ||| | |||||||| || | | ||||||||| | || Sbjct 316300 TGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGGTTGCGCATGTTGCTGCGGCGCG 316241 Query 153472 CGCTCGCTATGGGATAGTGATTGCGATCGATAATTTTGTTGAGGTTGCGCACCACCACTT 153531 | || | | || |||| ||||| || |||| ||| ||||||||| | | | Sbjct 316240 CTGTCTCGACTGGGTAGTAGTTGCGGTCAATAACACGGTTTAGGTTGCGCGTGATCTGCT 316181 Query 153532 TAGTTATCGCCTTAAGTTTCTCG------AAATCATAGGTCATTTCGTCGACGCGTACGC 153585 | || | || | || || | || || | | |||| || || ||| Sbjct 316180 TCGTCACGGCGTAGAGAAGCTGGTGGTTGAACTC---GCGCTTTTCAACGTCG---ACGA 316127 Query 153586 ATCGATTCACGGCAATAGACGCCAGATTACAGACGGCCGTCTCTTC-GGCGTCGCTGTAC 153644 | || || || || || || || || || ||||||||||| || |||| || ||||| Sbjct 316126 AGCGCGGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACG-TGTAC 316068 Query 153645 TGCACGATCTCGGCGCAGAGGTTGCTGCATTTTATGACGCCCAAA--TTTTGCTGATTGC 153702 | || || || | ||| ||||| ||| || || || || || || | ||| || Sbjct 316067 TCGACAATTTCAGTGCACAGGTTCGAGCACTTGAT--CGTCCCAAGGTTCTTCTGGTTTG 316010 Query 153703 TTTTGCGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTT 153762 |||| ||||| || || ||| | || ||| | || ||||| ||||||| || | | Sbjct 316009 ACTTGCTGTTGCATGCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACT 315950 Query 153763 CGACGAT---AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGC 153819 | | ||| ||||| || |||||||| | | | || | |||||| || Sbjct 315949 CCAGGATGGCAAACCA---CACCTCCTGCGCCTGGATCGTCTTGACACCGCGGCCTTCCG 315893 Query 153820 TCTCGTATCGCTCGTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGAC 153879 |||||| |||||||| || ||||| ||| | ||||| | ||||||| |||||| || | Sbjct 315892 CCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGC 315833 Query 153880 AC-TGATGCGGACACATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGA 153938 || || | || | |||||||| |||| | || ||||| || |||||||| Sbjct 315832 ACGTGTTAGGGTC-CATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAG 315774 Query 153939 TCCGGCACCCAGAGCGCGTACATGAGGTCGCG--CGCCTTGCAATCCTCCGCGCCCATGT 153996 ||||| | ||| | |||||| | |||||| || ||| || || ||| |||| ||| Sbjct 315773 TCCGGGATCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGG--TCATCCTTGCCCGTGT 315716 Query 153997 TGCGTTTCAGATTGAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCA 154056 |||| ||||| || | | | ||| ||||| |||||||| || | |||||||| | Sbjct 315715 TGCGCTTCAGCAACAGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGA 315656 Query 154057 GGGCACCTTTACGCTTTCCGCC---CTGATCGACGTGGCGCACCATATTGTTGAAGACGC 154113 ||| || || ||||| ||||| ||| || |||| ||| | | ||||||||||||| Sbjct 315655 AGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGC 315596 Query 154114 GCACCATGGGTTCCAGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGG 154173 ||| ||| ||| | || ||| | | ||||||||||| | || | ||||||| || Sbjct 315595 GCAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGG 315536 Query 154174 CGCGCACTTGATGCACGTTAACGCCAATGCCGCCG-CCGTACTTTGAT-ATGGCAGCGCA 154231 |||| | | ||||| | | |||||||||||| ||| | ||| | || | ||||| Sbjct 315535 CGCGGATGTTGTGCACATGCAGACCAATGCCGCCGGCCG--CCTTGCTGATCACGGCGCA 315478 Query 154232 GTCGCCCAGCGTCCTGTAGATGCCGTCGATGCTATCGT-CGCGGACGCCGAGCAAGAAAC 154290 || |||||| |||||||||||||||||| |||| | |||||| | || ||| | Sbjct 315477 CTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCC-ACCAGGAAGC 315419 Query 154291 ACGAACACATTTGCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGT-A 154349 |||| | ||||||||| | | || || || |||||||| ||| | ||||| || | Sbjct 315418 ACGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGA 315359 Query 154350 AACAGTTTTTGGCTCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGA 154409 || || | | ||||| |||||| || ||| | || ||| |||||| Sbjct 315358 AAAAGCCCATCG-ACATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGG 315300 Query 154410 ATGCCGAGCGCGACGCGCATGAGCATGTGCTGCGGACGTTC 154450 ||||| || ||||| ||||| | ||| ||||| || || || Sbjct 315299 ATGCCAAGGGCGACACGCATAAACATCTGCTGAGGCCGCTC 315259 >seq22 Length=644210 Score = 147 bits (162), Expect = 2e-30 Identities = 362/538 (67%), Gaps = 11/538 (2%) Strand=Plus/Minus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| || || ||| | || ||| | | || ||||| ||||||| || Sbjct 486214 GCTGCTGCACGCGATCCAG-ACGATCCCATGCATCCAGAAGAAGGCGGAGTGGGCCGTGC 486156 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||| | |||| | ||| | ||| | | |||| || | | ||| ||| ||| Sbjct 486155 GGTGGATTGGGAGC---AGCGCGA-GCTTCCAGGAGCGGCTGATCGGCTTTGCCGCAGTG 486100 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||| | || |||||||| ||| ||| | || | | || | | || | Sbjct 486099 GAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTG 486040 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || ||||||||||||||||| | || ||||||||||| || || ||||||||| Sbjct 486039 ATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 485980 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG-GATTCGGACACGATCCT 52600 || ||||| || ||||| ||| | | | | ||| || || | || | || Sbjct 485979 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCG-TGCT 485921 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 | || | ||| |||||| |||||| ||||| | | |||||| ||||| Sbjct 485920 GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGT 485861 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG-AGTACATCGAGTTTGTGGCGGATC 52719 |||| | |||||||| || || ||| ||| ||||||| ||||| || ||||| | Sbjct 485860 GCGGCTGATTGGCATGAATGCTGAGCTGATG-GCGCAGTACATTGAGTTCGTCGCGGACC 485802 Query 52720 GTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTA 52779 | ||| | ||| ||| || || ||| ||| |||||| | || ||||| || | Sbjct 485801 GGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTCA 485742 Query 52780 TGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | || ||||| ||||||| || ||||| ||||||||| || |||||||| Sbjct 485741 TGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAAGAAGGTGGGCGAGTA 485684 >seq27 Length=1043456 Score = 143 bits (158), Expect = 3e-29 Identities = 359/537 (67%), Gaps = 9/537 (2%) Strand=Plus/Minus Query 52304 GCTGCTGAATGCGTTCGAGCACG-TGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGA 52362 ||||||| | ||| || || ||| | || ||| | | || ||||| ||||||| || Sbjct 845811 GCTGCTGCACGCGATCCAG-ACGATCCCATGCATCCAGAAGAAGGCGGAGTGGGCCGTGC 845753 Query 52363 AGTGGATCGAGAGCGACACCGCCACGCTGGCCG-AGCGCATGGTGGCCTTCGCCATAGTC 52421 |||||| | |||| | ||| | ||| | | |||| || | | ||| ||| ||| Sbjct 845752 GGTGGATTGGGAGC---AGCGCGA-GCTTCCAGGAGCGGCTGATCGGCTTTGCCGCAGTG 845697 Query 52422 GAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATA 52481 |||||||| || |||||||| ||| ||| | || | | || | | || | Sbjct 845696 GAGGGCGTCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAAGCGCGGTCTG 845637 Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 ||||| || ||||||||||||||||| | || ||||||||||| || || ||||||||| Sbjct 845636 ATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 845577 Query 52542 TTTGCGTGCCTCTACTACAAGACGCGCGTGACCGAAAAATTG-GATTCGGACACGATCCT 52600 || ||||| || ||||| ||| | | | | ||| || || | || | || Sbjct 845576 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCG-TGCT 845518 Query 52601 GAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGT 52660 | || | ||| |||||| |||||| ||||| | | |||||| ||||| Sbjct 845517 GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGT 845458 Query 52661 CGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCG 52720 |||| | |||||||| || || ||| ||||||| ||||| || ||||| || Sbjct 845457 GCGGCTGATTGGCATGAATGCTGAGCTGATGGAGCAGTACATTGAGTTCGTCGCGGACCG 845398 Query 52721 TCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTAT 52780 ||| | ||| ||| || || ||| ||| |||||| | || ||||| || || Sbjct 845397 GCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACTTCAT 845338 Query 52781 GAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 | | | || ||||| ||||||| || ||||| || |||||| || |||||||| Sbjct 845337 GGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAAGAAGGTGGGCGAGTA 845281 >seq31 Length=1340778 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | |||||||| || ||||||||||| Sbjct 825901 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 825960 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||||| || || || |||| | |||| || ||||| |||||||| || Sbjct 825961 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 826020 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || || || ||||| ||| || || | | || | |||||| ||| |||||| Sbjct 826021 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 826080 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGG 138616 ||||| || | ||| || || ||||| || || || || |||||||||| Sbjct 826081 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 826130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262182885200