Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq31 107 2e-18 seq28 107 2e-18 >seq31 Length=1340778 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | |||| ||||| || | ||| ||||| || || || ||||| || Sbjct 825902 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 825961 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || || || |||||| |||||||| || || || Sbjct 825962 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 826021 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||||||| ||| || ||| | | |||| ||||| | ||| || Sbjct 826022 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 826081 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 127115 |||| | | ||| ||||||||||| || || || || |||||||||| Sbjct 826082 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATGG 826130 >seq28 Length=1152636 Score = 107 bits (118), Expect = 2e-18 Identities = 288/432 (67%), Gaps = 19/432 (4%) Strand=Plus/Minus Query 147069 ATGCCAAGGCTCCACGTATGCGGCGAGTGCGCCTTTTCGCTTACCGCC---CTGATCGAC 147125 |||||| ||||| | || |||||| ||||| || ||||||||||| ||| || || Sbjct 315681 ATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTAC 315622 Query 147126 GTGGCGCACCATGTTATTGAAGACTCGTAACATGGACACGAGGCCGCCGGATTTTG---T 147182 || ||| | |||| |||||||| || | ||| | ||||| ||| || | | Sbjct 315621 GTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGTT 315562 Query 147183 GGTGCCGT---TGTAT-TGA-----GCGCTGACGCTTTGCACGCTCAGCCCGAGACCTCC 147233 ||| || |||| || |||| || | | ||||| ||| || | || || Sbjct 315561 GGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAGACCAATGCCGCC 315502 Query 147234 GCCCAGATTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTC 147293 | || || |||| ||| |||| | || || | ||||||||||||||||||||| Sbjct 315501 GGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTC 315442 Query 147294 TTCCTT-GATGCATTGCAGGAAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAA 147352 ||||| || || |||||| ||||| | |||||| || ||||| || | Sbjct 315441 GTCCTTCGACGC-CACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTGA 315383 Query 147353 ACAGCGTGGGGCTGGCGTGCGTGAACGTGCCCAGACTCATCA-ATTGATACGTTTCAATG 147411 | || || || ||||||| ||||| ||||| ||||| |||| ||||| ||| Sbjct 315382 AGAGGGTTGGAGTGGCGTGGGTGAAAAAGCCCATCGACATCAGATTG-TACGTCTCACGC 315324 Query 147412 GCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGT 147471 || | | | || |||||| ||| | |||||||| ||||| | ||| ||||| || Sbjct 315323 ACGTTGTTGAGATCTCTGCCGTGGATGCCAAGGGCGACACGCATAAACATCTGCTGAGGC 315264 Query 147472 CGTTCCGCAATC 147483 || ||| ||||| Sbjct 315263 CGCTCCACAATC 315252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500591968400