Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq28 116 3e-21 >seq28 Length=1152636 Score = 116 bits (128), Expect = 3e-21 Identities = 378/584 (65%), Gaps = 5/584 (1%) Strand=Plus/Plus Query 122915 TCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGAC 122974 ||| || ||| | ||||| ||||| | ||| | ||||| | || || | |||| | Sbjct 315267 TCAGCAGATGTTTATGCGTGTCGCCCTTGGCATCCACGGCAGAGATCTCAACAACGTGCG 315326 Query 122975 CGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGC 123034 || || ||| || ||||||| |||||||| ||||| | ||| || | ||| Sbjct 315327 TGAGACGTACAATCTGATGTCGATGGGCTTTTTCACCCACGCCACTCCAACCCTCTTCAA 315386 Query 123035 CGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAG 123094 ||| ||||| | ||| || || ||||| || || | | | | || ||||| Sbjct 315387 CGCTGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGACGACAG 315446 Query 123095 CATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTTCCAAATTTGGCGGCGG 123154 |||| ||| ||||| || || || || ||||| |||| ||| | |||||| Sbjct 315447 CATCGACGGCATCTACGATACGCTGAAGGAGTGCGCCGTGATCAGCAAGGCGGCCGGCGG 315506 Query 123155 CATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAGAAGCACCGACGG 123214 ||| || || | |||||| || | | | | ||| ||| ||| | ||| |||| Sbjct 315507 CATTGGTCTGCATGTGCACAACATCCGCGCCGCCGGCAGCTACATTGCTGGAACCAACGG 315566 Query 123215 AATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGA 123274 | | ||| |||| | | |||||||| || | ||| ||| | | || |||| || Sbjct 315567 CACGTCGAACGGACTCGTACCAATGCTGCGCGTCTTCAACAACACTGCCCGCTACGTAGA 315626 Query 123275 CCAGGGCGGC---AAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGA 123331 |||||||||| || ||||| ||||| | || ||||||| || || ||||| | || Sbjct 315627 CCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCATGCCGA 315686 Query 123332 TGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGA 123391 ||| | | ||| | | || ||||||| ||| ||| || || ||||| || Sbjct 315687 TGTCTTTGGTTTCCTGTTGCTGAAGCGCAACACGGGCAAGGATGACCAGCGCGCCCGTGA 315746 Query 123392 TTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGT 123451 | || ||||| || ||| | || || ||||| ||| || || ||| || || Sbjct 315747 CCTCTTCTACGCGTTGTGGATCCCGGACTTGTTCATGAAGCGTGTCAAAAGTGAGGGGCG 315806 Query 123452 GTGGTCGCTCATGTGTCCCGATC-GGTGTCCCGGCTTGAGCGAC 123494 |||| |||| ||| | ||| | | ||| || ||| | |||||| Sbjct 315807 GTGGACGCTGATG-GACCCTAACACGTGCCCGGGCCTCAGCGAC 315849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003002248600