Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq22 293 2e-74 seq27 289 3e-73 seq31 136 4e-27 >seq22 Length=644210 Score = 293 bits (324), Expect = 2e-74 Identities = 570/831 (69%), Gaps = 18/831 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 |||||| ||| || || || ||||||||||| ||||| || || || ||||| |||| Sbjct 485665 CATCACACCAGCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTTTTGCCCTG 485724 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || ||||| | | || |||||||||||| || Sbjct 485725 CAGCGAGATCATCTCCATGAAGTCAAAGGGCTGAGTTGCGTTGTAGTGCTTCTCCTCGCC 485784 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| || ||||||| ||| || |||||||| ||||| |||| ||| || ||| Sbjct 485785 CAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCAGCATT 485844 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCG 132829 | || | ||| |||||||| ||||| || || ||| || | |||||| |||| Sbjct 485845 CATGCCAATCAGCCGCACCGGAAGCGCGTCACAGATGAACTCGC-GTTCGATGTTCACCG 485903 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTT---GCACCAAATGC---T 132883 | || | ||| ||| |||||| | || |||| ||| || | ||| | Sbjct 485904 CATCCACAATGATCTCCAGCACGCGCTC---GCGCGGCAGTTTGTGCTTGATGTGCGAGT 485960 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || || || ||||| || | ||||||||| | || ||||| ||||||| Sbjct 485961 TGTACAGCAGACACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGC 486020 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| ||||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 486021 TGAACGTCAATCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATC 486080 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGGCT 133062 | |||||||||| |||||| || || || |||||| | ||| ||||| ||| | || Sbjct 486081 CGGAAAAGAAGATGCCCTCCACTGCGGC-AAAGCCGATCAGCCGCTCCTGGAAGCTCGCG 486139 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 |||| | ||||| |||| ||||| || ||||| | | || ||| || ||||| Sbjct 486140 C---TGCTCCCAATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTC 486196 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGG 133182 | ||| |||| || || || || ||||| || | | ||| ||||| | || Sbjct 486197 TGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCGCTGTCTGTGATGTACGTGTCCAGTAGC 486256 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 || || | || ||||| | ||||||||| | || || ||||| || ||| Sbjct 486257 ACAGAGTATGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGC 486316 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || |||||||| | | ||||| ||| |||||||||| Sbjct 486317 GCCTCCGGCACCTTCACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCG 486376 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 ||||| ||||||| ||||| |||||||||||||| || || || || ||||||| || Sbjct 486377 TCGCTCCCGGCGAAGAAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTC-AG 486435 Query 133363 CG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 || | ||||||| | |||| ||| |||||| | |||||| || ||||| Sbjct 486436 CGCCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCA 486486 >seq27 Length=1043456 Score = 289 bits (320), Expect = 3e-73 Identities = 569/831 (68%), Gaps = 18/831 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||||||||| || || || ||||||||||| |||||||| || || ||||| |||| Sbjct 845262 CATCACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCTG 845321 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGAT 132710 || || || | | ||| || || ||||| | | | |||||||||||| || Sbjct 845322 CAGCGAGATCATCTCCATGAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCC 845381 Query 132711 CAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATT 132770 ||| || ||||||| ||| || |||||||| ||||| ||| ||| || ||| Sbjct 845382 CAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTACTGCTCCATCAGCTCAGCATT 845441 Query 132771 AAGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGA-GAAAGCGTTGCTCGATGGCGACCG 132829 | || | ||| |||||||| ||||| || || ||| || | |||||| |||| Sbjct 845442 CATGCCAATCAGCCGCACCGGAAGCGCGTCACAGATGAACTCGC-GTTCGATGTTCACCG 845500 Query 132830 CGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTT---GCACCAAATGC---T 132883 | || | ||| ||| |||||| | || |||| ||| || | ||| | Sbjct 845501 CATCCACAATGATCTCCAGCACGCGCTC---GCGCGGCAGTTTGTGCTTGATGTGCGAGT 845557 Query 132884 TGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGC 132943 || ||| || || || ||||| || | ||||||||| | || ||||| ||||||| Sbjct 845558 TGTACAGCAGACACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGC 845617 Query 132944 TGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGC 133003 |||| ||||| || ||||| || ||||| || || ||||| || | ||| ||| | Sbjct 845618 TGAACGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATC 845677 Query 133004 CCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCC-ACCAGGCGCTCGCCGAACGTGGCT 133062 | ||||||||||||||||| || || || |||||| | ||| ||||| ||| | || Sbjct 845678 CGGAAAAGAAGACGCCCTCCACTGCGGC-AAAGCCGATCAGCCGCTCCTGGAAGCTCGCG 845736 Query 133063 TCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTT 133122 |||| | ||||| |||| ||||| || ||||| | | || ||| || ||||| Sbjct 845737 C---TGCTCCCAATCCACCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTC 845793 Query 133123 TCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGG 133182 | ||| |||| || || || || ||||| || | | ||| ||||| | || Sbjct 845794 TGGATCGCGTGCAGCAGCCGCAGCTTCTCCTCGCTGTCTGTGATGTACGTGTCCAGTAGC 845853 Query 133183 GTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGC 133242 || || | || ||||| | ||||||||| | || || ||||| || ||| Sbjct 845854 ACAGAGTATGTCTCTGAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGC 845913 Query 133243 GCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCG 133302 ||||| ||||| ||| || |||||||| | | ||||| ||| |||||||||| Sbjct 845914 GCCTCCGGCACCTTCACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCG 845973 Query 133303 TCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAG 133362 ||||| ||||||| || || |||||||||||||| || || || || ||||||| || Sbjct 845974 TCGCTCCCGGCGAAGAAAGCGAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTC-AG 846032 Query 133363 CG-CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 || | ||||||| | |||| ||| |||||| | |||||| || ||||| Sbjct 846033 CGCCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCA 846083 >seq31 Length=1340778 Score = 136 bits (150), Expect = 4e-27 Identities = 172/231 (74%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| || ||||| || ||| | |||| || ||||| | | Sbjct 826128 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTGGAGGCGAGC 826069 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-ACC 38361 |||| | | |||| | || | || |||| ||||| ||||| || ||||||| ||| Sbjct 826068 GACACGATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGACC 826011 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| || || | || ||||| |||||||| || | ||||| ||| ||||||| Sbjct 826010 AGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACA 825951 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||| ||||| | |||||||| |||||||||| || | ||||||| Sbjct 825950 ACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGCC 825900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172581174400