Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq28 289 4e-73 seq26 212 8e-50 >seq28 Length=1152636 Score = 289 bits (320), Expect = 4e-73 Identities = 850/1299 (65%), Gaps = 33/1299 (3%) Strand=Plus/Plus Query 6868 CGTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGT 6927 ||| |||||||| || ||||| | || |||||||| || | | || | || || Sbjct 1066084 CGTCGAGAAGATCTGGCTCTTCTTGGTCGGGATCGTCGTGTTGCGCTTGATCAGCGCCGT 1066143 Query 6928 CATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAG 6987 ||| | || || || || | || || | ||| || ||||| |||| || | ||| Sbjct 1066144 CATCACGCCGCCGGCCGTCTCAATGCCCAGGGTCAGCGGCGTCACATCCAGCAGCAGCAG 1066203 Query 6988 GTCTTGAACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 | | | | | | | | ||| | ||||| | |||| || || |||| || ||| Sbjct 1066204 GCCCTC--CGTCTGCTTGCTCTTGCCGCCCGTCAGGATGAACGCCTGCACCGCAGCGCCG 1066261 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 || ||||| ||||| |||||||| || | || ||||| || || ||| || | ||| Sbjct 1066262 TACGCGACAGCCTCGTCGGGGTTGATGCTCTTGTTCAGCTCCTTGCCGCCGAAGAAGTCC 1066321 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | || | |||||||| || ||||| || || |||| || | || | | Sbjct 1066322 GACACGAGGGACTGCACCTTCGGGATGCGCGTCGACCCGCCCACCAGCACCACGTCGTGC 1066381 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || || || ||||| | ||| | || || || || | ||| | Sbjct 1066382 ACGGAGCGCTTGTCCATCTTCGCGTCCTGCAGCACGCGCTCCACCGGCTGCATTGTGCTG 1066441 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||| ||| ||||| ||||| || || || || || ||| | | ||| || Sbjct 1066442 CGGAACAGGTCGCCGCACAGCTCCTCGAAGCGCGCGCGCGTGATGTTGGCCTGGAAGTCG 1066501 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 ||| |||| | | || || || || || || | || | || || || | ||| ||| Sbjct 1066502 ACGTTGTCGAACAGCGCGTCGATCTCGATCGTCGCCTGCGTCGCGGACGACAGCGTGCGC 1066561 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || |||||||| |||||||| || | || || || || || || | |||| || Sbjct 1066562 TTCGCGCGCTCGCACGCCGTGCGCAGGCGGCGCAGCGCGCGGTGGCTCGACGAAAGGTCC 1066621 Query 7406 TT---CTTATGTTTACGTTTAAACTCTTCAGAGAAG----TGTCGAAGGAGTCTCGAATC 7458 || ||| | || || || ||||| || | |||| || ||| | || || Sbjct 1066622 TTACCCTTGTTCTTGCGCTTGAACTCCTCGGTGAAGAACGTGACGAGGCGGTTG----TC 1066677 Query 7459 GAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCC 7518 || || || || || | ||| || || || ||||| || || || ||||| || || Sbjct 1066678 AAAGTCCTCGCCGCCAAGGTGCGTGTCACCGTTCGTCGCCTTCACCTCGAAGATGCCGCC 1066737 Query 7519 TTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT 7578 || || | | || || ||||| ||||| || || || ||||| || ||||| ||||| Sbjct 1066738 GTCGATCGTCAGCAGCGTCACATCGAACGTGCCGCCGCCAAGGTCGAAGATGAGCACGTT 1066797 Query 7579 CGTATCGT---CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || | |||| | | ||| || || ||||||||||| |||||||| ||||| || Sbjct 1066798 GCGCTCCTTGCCGTCGTCGCCCTTGTCCAGGCCGTACGCGATGGCCGCCGCTGTTGGCTC 1066857 Query 7636 ATTAATAATACGAAGACAGTTC-AGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 || || || || || || || ||||||||||| || | || || |||||||| || | Sbjct 1066858 GTTGATGATGCGCAG-CACCTCTAGGCCAGCAATCGTGCCGGCGTCCTTCGTCGCCTGGC 1066916 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | ||||| ||||| ||||||||||| ||||| || || || | | | || | ||| || | Sbjct 1066917 GCTGCGAGTCGTTGAAGTAGGCCGGCACCGTCACCACAGCCTTCTTCACCTGCTTGCCCA 1066976 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | |||| || || | || ||||| || || |||||||| ||||| || | || Sbjct 1066977 GGTACGCCTCTGCCGTCTCCTTCATCTTCAGCAGCACCATCGAGCTGATCTCCTCCGGCG 1067036 Query 7815 -CAAACTGTT----TCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 || | || ||||| || || | | || ||||| ||| || || | | Sbjct 1067037 TGAAGATCTTCTCCTCGTTGCA--GT---ACTGCACCGAAATCACGGGCTTGTCGTCGCC 1067091 Query 7870 ACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAA 7929 | | ||||| | | ||| | ||||| || | || ||| |||| | Sbjct 1067092 CTTCGTCTTCACCTTGAAGGGCCAGTGCTTCATGTCCGCCTGCACCACCGGGTCGCCGTA 1067151 Query 7930 CTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTG 7989 ||| | || || || ||||| || || || || ||||| | |||||||| || || Sbjct 1067152 CTTGCGGCCAATCAGGCGCTTCGCGTCGAACACCGTGTTGTGCGGGTTCATCGCCACCTG 1067211 Query 7990 GTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGG 8049 ||||||||| || || ||||| || || || ||||| ||||| |||||||| || Sbjct 1067212 GTTCTTCGCGGCATCGCCGATCAGGCGCTC---CGAGTCCGTGAACGCAACGTACGACGG 1067268 Query 8050 GGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCC 8109 ||||| || || || ||||||||||| || || || ||||| ||||| ||||| ||||| Sbjct 1067269 CGTCGTGCGGTTACCCTGGTCGTTCGCGATGATCTCCACGCGCTCGTTCTGCCACACGCC 1067328 Query 8110 GACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 |||||||| ||||| || || | || || || || || Sbjct 1067329 CACGCACGAGTACGTCGTGCCCAGGTCGATGCCAATGGC 1067367 Score = 123 bits (136), Expect = 3e-23 Identities = 234/342 (68%), Gaps = 8/342 (2%) Strand=Plus/Minus Query 7456 ATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACC 7515 |||||| ||||||||||| | ||| || || || ||||| ||| || |||| ||| Sbjct 450966 ATCGAAGTCTTCACCACCAAGGTGGGTGTCACCGTTTGTCGCGACGACCTCGAAGAAACC 450907 Query 7516 TCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC 7575 | || || | | ||| || ||||||||||| |||||||| ||||| || | || | Sbjct 450906 CTCGTCGATCGTCAGCAAAGACACATCAAACGTGCCACCACCGAGGTCGAAGACAAGGAT 450847 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||| | || | | ||||| ||| |||||||| || || |||||||| || || Sbjct 450846 ATTCTTCTCCCCAGCCTTGTT------GAGGCCGTACGCAATGGCAGCCGCCGTCGGCTC 450793 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCC-GCATCTTTCGTCGCTTGTC 7694 || || || || | ||| ||||| || || ||||| | || || || || || | Sbjct 450792 GTTGATGATGCGGACCACGTTAAGGCCGGCGAT-CTTGCCAGAGTCCTTTGTTGCCTGGC 450734 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 | |||| ||| || ||||| || || || || || || |||| | | || |||| |||| Sbjct 450733 GCTGCGCATCATTGAAGTACGCTGGCACGGTCACCACAGCGTTCTTCACCTTCTCGCCGA 450674 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | | | || | ||| || ||||| || || ||||||| Sbjct 450673 GGAATGTCTCGGAGATCTCCTTCATCTTTTGCAGTACCATCG 450632 >seq26 Length=1024527 Score = 212 bits (234), Expect = 8e-50 Identities = 734/1131 (65%), Gaps = 23/1131 (2%) Strand=Plus/Minus Query 7028 GCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCT 7087 || || |||| ||| ||||| || || |||||||||||||| || | || || || Sbjct 402142 GCCTGCACCGCCGCACCGTACGCAACAGCCTCATCGGGGTTGATGGAGCGGTTTAGCTCC 402083 Query 7088 TTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCG 7147 || |||| ||| | | ||| | || || || || ||||||||||| ||||| |||||| Sbjct 402082 TTGCCGTCAAAGAACTGCGAGACAATCTGCTGGATCTTCGGGATTCGGGTCGAACCACCG 402023 Query 7148 ACCAAAACGATTTCATTCACTTTC-GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTC 7206 || | |||| || ||||||| | | | || || | | ||| || || | Sbjct 402022 ACAAGGACGACGTCGTTCACTTCCTGCGGTTTC-ATGTCCGCATCTTCCAGCACCTTCTT 401964 Query 7207 GACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGT 7266 || || ||| || || |||| || |||| ||||| || |||||||| || Sbjct 401963 CACCGGCACCAGGCACTTCTCGAACTGATCGCGGCACATCTCCTCGAAGCGTGCACGCGT 401904 Query 7267 AATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGC 7326 || | |||| || ||| ||||| | || ||||| || ||| ||| | Sbjct 401903 GATCTTCGAGAAGAAGTCGGTGCCCTCGTACAGCGCGTCAATCTCGATGTTTGCTAT--- 401847 Query 7327 CGTCGAA---GATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGC 7383 ||| ||| || | ||| ||||| | ||||| ||||| || || | || || ||| Sbjct 401846 CGTGGAACTCGACAGCGTGCGCTTCACACGCTCGCACGCTGTGCGCAGTCGGCGCGTGGC 401787 Query 7384 ACGCGGGTTACCG-GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT-GT 7441 ||| | ||| || | | ||| | | | || | |||| | |||| || Sbjct 401786 ACGGGCGTTGGCGCGGCAGTCCTTGCCACAGCGCATCTTGAG-CTCTGTGGCAAAGTAGT 401728 Query 7442 CGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTG 7501 ||| | || | || || || || || || | ||| || || |||||||||||||| Sbjct 401727 CGACG-AGGCGGTTGTCAAAGTCCTCGCCGCCGAGGTGAGTGTCACCCGCGGTCGCTTTC 401669 Query 7502 ACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGG 7561 || || || | || || || | | || || ||||| ||||| || || || ||| Sbjct 401668 ACCTCGAACACGCCGGACTCGATCGTCAGCAGCGTCACATCGAACGTGCCGCCGCCAAGG 401609 Query 7562 TCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTA---TCGAGACCGTACGCGATA 7618 ||||| || || |||||| | || | | | | ||| || | |||||||||||| Sbjct 401608 TCAAAGATCAGCACGTTCTTCTCTCCCTTCTCTTCCTTGCGGTCCATGCCGTACGCGATA 401549 Query 7619 GCCGCCGCCGTTGGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGC 7677 || || || || || || || || || || || ||| || |||||||| || | | || Sbjct 401548 GCGGCGGCGGTCGGCTCGTTGATGATGCGCAGCACA-TTGAGGCCAGCGATGGCCCCGGC 401490 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 ||| ||||| || || || ||||| ||||| ||||| |||||||| |||| || || | Sbjct 401489 ATCCTTCGTTGCCTGACGCTGCGAGTCGTTGAAGTACGCCGGGACGGTTATAACGGCATT 401430 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | | || || | ||||| || | |||||| | || ||||| || || ||||| | Sbjct 401429 CTTCACGGTCGTGCCGAGGTAGGCTTCCGCCGTCTCCTTCATCTTCTGCAGCACCATAGC 401370 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGG 7857 || || || || | |||| || | | || | | | || || || || | ||| Sbjct 401369 AGAGATTTCCTCCGGGAAAAACGTCTTGGACTGGCCCTGATACTCGACCTCGATGACGGG 401310 Query 7858 TTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTG 7917 || || | | | | ||||| | | ||| | ||||| ||| || | | Sbjct 401309 CTT---GCCATCCTTGACGGTCACCTTGAAGGGCCAGTGCTTCATGTCGGACTGAAGGTC 401253 Query 7918 TTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTT 7977 | || |||| | ||||| | ||||| || ||||| || ||||| | ||||| Sbjct 401252 GGGATCGTCGTACTTGCGGCCGATCATGCGCTTCGCGTCAAACACCGTGTTGCTTGGGTT 401193 Query 7978 CATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGC 8037 ||| || |||||||| || || || ||||| || || || | || || || || Sbjct 401192 CATCGCCACCTGGTTCTTTGCGGCATCGCCGATCAGGCGCTC---CGTCTCGGTGAAGGC 401136 Query 8038 GACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTT 8097 || || || || || || || || || |||||||| ||||||||||| || | ||||| Sbjct 401135 CACATAGGACGGCGTTGTGCGGTTGCCCTGGTCGTTGGCAATAATTTCCACCTGTTCGTT 401076 Query 8098 TTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGATTGC 8148 | |||||||||||||||| || || || || | || || ||||| || Sbjct 401075 CTTGAAGACGCCGACGCACGAGTATGTCGTGCCCAGGTCGATGCCGATCGC 401025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132522129400