Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq28 145 9e-30 seq23 84.2 3e-11 seq24 82.4 9e-11 seq16 82.4 9e-11 >seq28 Length=1152636 Score = 145 bits (160), Expect = 9e-30 Identities = 553/857 (65%), Gaps = 21/857 (2%) Strand=Plus/Minus Query 106457 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 106516 || || ||||| || || | ||||| || |||||||| ||| |||||||| | | Sbjct 316121 GGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACA 316062 Query 106517 ATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTG 106576 ||||| || |||| ||| || | ||| |||||||| | ||||| ||||| ||| || Sbjct 316061 ATTTCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTG 316002 Query 106577 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATT 106636 ||||| ||||||||||| || ||| | ||| |||||||| |||| |||| || || Sbjct 316001 TTGCATGCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATG 315942 Query 106637 GCCTTCCACACAT-CGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTA 106692 || |||||| | | ||| |||| || | ||| | || || ||||||||||| Sbjct 315941 GCAAACCACACCTCCTGCGCCTGG----ATCGTCTTGACACCGCGGCCTTCCGCCTCGTA 315886 Query 106693 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 106751 |||||| || ||| |||| ||| || |||| ||| || || | ||| Sbjct 315885 GCGCTCGTAGAGCCGCTCGAACGCCTC-GCCATGGCAGTCGCTGAGGCCCGGGCACGTGT 315827 Query 106752 CTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 106811 || | || | ||| | || | | || ||||||||||| | ||| || | Sbjct 315826 TAGGGTCCATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGA 315767 Query 106812 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG--TC- 106868 |||||| | | ||||| || | || || || | || |||| | || Sbjct 315766 TCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTCATCCTTGCCCGTGTTGCGCTTCA 315707 Query 106869 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | ||| ||||| | | || ||| || ||||| ||||| |||||||| |||| | | Sbjct 315706 GCAAC---AGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGC 315650 Query 106929 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||| || || || | || | ||| ||||| || ||| ||| || ||||| |||| Sbjct 315649 CCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCA 315590 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 107044 |||| | | || | || || || || || ||| || | ||| | Sbjct 315589 TTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAAT-GTAGCTGCCGGCGGCGCGG 315531 Query 107045 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 107104 | | || | |||| ||||| || || ||| ||| ||| || |||||| | Sbjct 315530 ATGTTGTGCACATGCAGACCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTC 315471 Query 107105 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 107164 || || | ||||| |||| ||| ||| ||||| || | |||||||| | | Sbjct 315470 AGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTC 315411 Query 107165 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 107224 || ||||| | || || ||||| |||||||||||||| || ||||| |||| | || Sbjct 315410 ATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAAGCCC 315351 Query 107225 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATG 107284 |||||| | ||| ||||| || | | ||| ||||||||||| | | Sbjct 315350 ATCGACATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGATGCCAAGG 315291 Query 107285 GCCACACGCATAAACAT 107301 || |||||||||||||| Sbjct 315290 GCGACACGCATAAACAT 315274 >seq23 Length=746973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 136166 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 136225 || ||| |||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 211332 TCCTATGGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 211273 Query 136226 GGTAGGAGC-TTTACCCA 136242 ||||||| | ||| |||| Sbjct 211272 GGTAGGACCATTTTCCCA 211255 >seq24 Length=832421 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 615058 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 615117 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 615118 CAGGTAGGAG 615127 >seq16 Length=681774 Score = 82.4 bits (90), Expect = 9e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 136164 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 136223 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 428703 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 428644 Query 136224 CAGGTAGGAG 136233 |||||||||| Sbjct 428643 CAGGTAGGAG 428634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980541883400