Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6 140 3e-28 seq31 98.7 8e-16 >seq6 Length=511626 Score = 140 bits (154), Expect = 3e-28 Identities = 372/565 (66%), Gaps = 14/565 (2%) Strand=Plus/Minus Query 29787 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 29846 ||||||||| ||||| | || | ||| | ||||||| || ||||| || || || Sbjct 362916 CTCGAGCTGCACTTTCAGAGCATCGATGTGGTTGCGGTAGACATGGGCGTCGCCGAGCGT 362857 Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| || | || || || || || ||| | | ||||| | | ||||| || | Sbjct 362856 GTGCACGAGTTCCCCAGGCCGCAGACCCGTGGCTTTTGCCATAAGGATGGTGAGCAGCGC 362797 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||| ||||||||| ||||| || |||||||||||||| | ||| | |||||| ||| Sbjct 362796 GTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCATGTCGCACGAGCGCTGGTACAGCAT 362737 Query 29967 ACACGAGAGCTC--TC-CGTC---GCTCACGTAAAACTGACACATGGTGTGGCACGGAGG 30020 || || ||||| || |||| | ||||||| |||||| | ||| || || || Sbjct 362736 GCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGAACTGAGCAAGCAAGTGACAGGGCGG 362677 Query 30021 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30080 || ||||| | || | ||||||||||| | | || ||| | ||| | Sbjct 362676 CAGCGCCATCTCGTGCAGCGCGCATGGGTTCCAGGCAGTTAACAGGAGGCGGCGGTCGTT 362617 Query 30081 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30140 |||||| | ||||| |||||| | || | ||| |||||||| || ||| Sbjct 362616 TGGGTTCACCTTGATGGTCTCCACGATGGATTTGATCTGGTCCACCCCTTCGCCATCGTA 362557 Query 30141 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 | ||| | || |||||| ||||||||| || | ||||||||| ||||| || || Sbjct 362556 ATTCGCCTCAAACCCCTTGTACTGTGCTCCGAAGTGGCGCCACTGGAATCCGTAGACAGG 362497 Query 30201 TCCCAG----GTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256 || || ||||| | ||| | || ||||| | |||| | ||| || | | Sbjct 362496 ACCGAGATCCATCTCCTTATTCGCCGT----CAAGCCGCGGCTGTCGAGAAACTCGCGCG 362441 Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 30316 | ||||| | |||||||| | | |||| || | ||| | || |||||| | Sbjct 362440 AGCCGTTACCATCCCAGATGTGAATGTCCTTGTCCGCCAGCAACTGGGCGTTTGTTTCGC 362381 Query 30317 CTCTGACGAACCACAGCAGCTCCTC 30341 | | | |||||||||||||||||| Sbjct 362380 CGCGCAGGAACCACAGCAGCTCCTC 362356 >seq31 Length=1340778 Score = 98.7 bits (108), Expect = 8e-16 Identities = 72/84 (86%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52112 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52171 ||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| || Sbjct 37963 CCAGGAGGACATGCCCTTCAACCGCGACGGGGTCGTGCCGGACCTCATCATCAACCCGCA 37904 Query 52172 CGCCTTTCCATCCAGGATGACCGT 52195 |||| |||| ||| | ||||| || Sbjct 37903 CGCCATTCCCTCCCGCATGACAGT 37880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617425699055