Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq28 260 3e-64 seq22 150 3e-31 seq27 129 1e-24 >seq28 Length=1152636 Score = 260 bits (288), Expect = 3e-64 Identities = 1027/1584 (65%), Gaps = 65/1584 (4%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCG-GCCATGTCTATGAT 212752 |||||||| || || |||||| ||| || || | | ||| ||| |||||||| || | Sbjct 316904 AGGTTCAGTGATTGGGACTGGTCGATGTATTGGCCGCGGTC-GCGTGCCATGTCGATCAA 316846 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | | ||| | || ||||||||||||| | | | || || ||||| ||||||| ||| Sbjct 316845 CTTGCGCTGCGGGATCTCCCACACGGTCCGGTAAAGCTCCTTTAGGTCATCTGGGATGCC 316786 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | ||||| | | || || ||| | | | | |||||| | ||| ||||| Sbjct 316785 GTCAATGTTGAGGATCGAACCATTGTAAGAGATGATTTCGTTGCGCATTTGCTCATTCCA 316726 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 ||||| | | ||| | |||| |||| ||| || | |||| || || Sbjct 316725 CAGGCCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACTCGCCGCT 316666 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | || || ||| |||| |||| | ||||||||| || || Sbjct 316665 CAGCACACGGCGGACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGTTGCCGAG 316606 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCA---CTCC 213049 |||||| | ||| || || |||||||| | |||||| || ||| | | || | Sbjct 316605 AATCTGCGAGGTGGACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTATGCCTAC 316546 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 ||| | | | | || ||| ||||||||||| | ||| | | ||| | Sbjct 316545 CTGCATGACCTTCT--CTTTGAGGCTG-GCCCAGTCCCAGC-----GACCGCTGTTCGGC 316494 Query 213110 CTTCACGTTC---CACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTA 213166 | | ||||| ||||| || ||||||| ||||| | ||| | |||||| ||| | | Sbjct 316493 CG-CGCGTTCTTCCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGTCCTTGAA 316435 Query 213167 AGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTA 213226 | ||| || || | |||||| || ||||| |||| || | || ||| |||| Sbjct 316434 GGTCTTGTACGGTCCCTCCTCCTTTGCGAGCTCCATCGACGACTCGACCGCGGCGAAGTA 316375 Query 213227 GATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT 213286 |||||| || || |||||| || | | || ||||| | || ||| |||| Sbjct 316374 GATGGTCTCGAAGATCTCCGCATTCACCCGCTGCGCCTCCGCCGAGACGAACGGCAGTCG 316315 Query 213287 CATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAG 213346 |||| | || ||||| || ||||| || || | |||||||| | || | || Sbjct 316314 CATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGGTTGCGCAT 316255 Query 213347 GTTAGACTTGGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 ||| | || || || ||| | ||||| |||||| ||| || | ||| |||| Sbjct 316254 GTT-GCTGCGGCGCGCTGTCTCGACTGGGTAGTAGTTGCGGTCAATAACACGGTTTAGGT 316196 Query 213406 TGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACG---TAGCCCC 213462 |||| ||| | || || || | || || ||| |||||| || | | Sbjct 316195 TGCGCGTGATCTGCTTCGTCACGGCGTAGAGAAGCTGGTGGTTGAACTCGCGCTTTTCAA 316136 Query 213463 CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 |||| || || ||||| |||||| ||| |||||||| |||||| ||||| | Sbjct 316135 CGTCG---ACGAAGCGCGGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCG 316079 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 |||||||| | || || ||||||||||| ||| ||| || || ||||||| Sbjct 316078 GCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCT 316019 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||||||||| |||| | ||||||||| || ||| | || || ||||| | Sbjct 316018 TCTGGTTTGACTTGCTGTTGCATGCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGA 315959 Query 213643 GCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAG 213699 ||| ||| |||| || ||| ||| | | |||| |||| || | | ||||| Sbjct 315958 TCTGAGACTCCAGGAT--GGCAAACCACACCT-CCTGCGCCTGGATCGTCT---TGACAC 315905 Query 213700 CTCCGGGCGTA-GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC---CAGACC 213755 | | || | | |||||||| | ||||||||| | ||| | | ||| ||| | Sbjct 315904 CGC-GGCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCTCGCCATGGCAGTCG 315846 Query 213756 CTGTCCAGTCCCGGACAGGA-TGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814 ||| || ||||| || | | ||| | ||| || |||| ||| ||| | |||| Sbjct 315845 CTG---AGGCCCGGGCACGTGTTAGGGTC-CATCAGCGTCCACCGCCCCTCACTTTTGAC 315790 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 | || |||||||| |||||||| ||||| |||| ||| ||||| | || | | || Sbjct 315789 ACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTC 315730 Query 213875 GTCCACTCCAGAGTTTTTGCGC---AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGG 213931 ||| || | ||| |||| || || || |||||| || || ||||| || Sbjct 315729 ATCCTTGCCCGTGTT---GCGCTTCAGCAACAGGAAACCAAAGACATCGGCATGCCAGGG 315673 Query 213932 CTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGC 213988 ||| | |||| ||| ||||||||| | ||| |||||||||||| || | ||| Sbjct 315672 CTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGC 315613 Query 213989 CACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGC 214048 ||||||||| |||||| | ||||| || ||||| ||| ||||||||||| || Sbjct 315612 AGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGC 315553 Query 214049 TATATACGAGCCGGAGGCCCTCAGGT--TGCTCATGGAGAGCCCTATGCCACCGGCGTAC 214106 || || ||||| ||| | | || ||| |||| ||| || ||||| ||||| | Sbjct 315552 AATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAGA--CCAATGCCGCCGGCCGCC 315495 Query 214107 TTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCAT-CTGT 214165 ||| ||||| |||||| | ||| || || ||||||| | |||||||| | || Sbjct 315494 TTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTC 315435 Query 214166 GAGGTTCAGCAAGAAGC---AGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAG 214222 || | || || ||||| ||||| | || ||| | | | ||||| |||||| || Sbjct 315434 GACG-CCACCAGGAAGCACGAGCTC---ATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAG 315379 Query 214223 CGTGGGGCTGGCATGGATCATAAA 214246 || || |||| ||| | | ||| Sbjct 315378 GGTTGGAGTGGCGTGGGTGAAAAA 315355 >seq22 Length=644210 Score = 150 bits (166), Expect = 3e-31 Identities = 531/817 (65%), Gaps = 13/817 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| ||||||||||| || |||| || |||||| |||| Sbjct 485680 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTC 485739 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||| | | || ||| || | | ||||| | | ||||| Sbjct 485740 CATGAAGTCAAAGGGCTGAGTTGCGTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAG 485799 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||| ||||| | | ||| || |||||||| || || Sbjct 485800 CCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCAGCATTCATGCCAATCAGCCG 485859 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| || | || | || ||||| || || | ||| || ||| | | |||| Sbjct 485860 CACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACCGCATCCACAATGATCTC 485919 Query 48079 CTTAACGCGGGACTCT-GAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| | || |||||| | |||| | || |||| || || Sbjct 485920 CAGCACGCG---CTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACAGCAGACACGC 485976 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | ||| ||||| || ||||||| ||||| ||| | || || Sbjct 485977 GAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAATCCCGG 486036 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || ||||||||||| Sbjct 486037 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCC 486096 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||||||||| || || || | |||| ||| | | ||| || || || | ||||| Sbjct 486097 CTCCACTGCGGCAAAGCCGATCAGCCGCTC-CTGGAAG-CTCGCGCTGCTCCCA-ATCCA 486153 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| ||||||||| ||||||| || || | | || Sbjct 486154 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTCTGGATCGCGTGCAGCAG 486213 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||| | | || || || ||| | ||| |||| Sbjct 486214 CCGC-AGC-TTCTCCTCGCTGTCTGTGATGTACGTGTCCAGTAGCACAGAGTATGTCTCT 486271 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | |||||| |||||||| || | ||||| ||||| | Sbjct 486272 GAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGCGCCTCCGGCACCTTC 486331 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || |||||||| ||| || || || | || ||| Sbjct 486332 ACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCGTCGCTCCCGGCGAAG 486391 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 |||||||| || || || | || || || || || | | || || |||| ||| Sbjct 486392 AAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 486451 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 | ||| ||||||||||| | || || || ||||||| Sbjct 486452 ATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGA 486488 >seq27 Length=1043456 Score = 129 bits (142), Expect = 1e-24 Identities = 526/817 (64%), Gaps = 13/817 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| || || |||| || |||||| |||| Sbjct 845277 CTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTC 845336 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||| | | | ||| || | | ||||| | | ||||| Sbjct 845337 CATGAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAG 845396 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||| ||||| | ||| || |||||||| || || Sbjct 845397 CCGGTCCGCGACGAACTCAATGTACTGCTCCATCAGCTCAGCATTCATGCCAATCAGCCG 845456 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 ||| || | || | || ||||| || || | ||| || ||| | | |||| Sbjct 845457 CACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACCGCATCCACAATGATCTC 845516 Query 48079 CTTAACGCGGGACTCT-GAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| | || |||||| | |||| | || |||| || || Sbjct 845517 CAGCACGCG---CTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACAGCAGACACGC 845573 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | ||| ||||| || ||||||| ||||| ||| | || || Sbjct 845574 GAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGG 845633 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || ||||||| ||| Sbjct 845634 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGACGCC 845693 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||||||||| || || || | |||| ||| | | ||| || || || | ||||| Sbjct 845694 CTCCACTGCGGCAAAGCCGATCAGCCGCTC-CTGGAAG-CTCGCGCTGCTCCCA-ATCCA 845750 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| ||||||||| ||||||| || || | | || Sbjct 845751 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTCTGGATCGCGTGCAGCAG 845810 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||| | | || || || ||| | ||| |||| Sbjct 845811 CCGC-AGC-TTCTCCTCGCTGTCTGTGATGTACGTGTCCAGTAGCACAGAGTATGTCTCT 845868 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | |||||| |||||||| || | ||||| ||||| | Sbjct 845869 GAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGCGCCTCCGGCACCTTC 845928 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || |||||||| ||| || || || | || ||| Sbjct 845929 ACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCGTCGCTCCCGGCGAAG 845988 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 || || || || || || | || || || || || | | || || |||| ||| Sbjct 845989 AAAGCGAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 846048 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 | ||| ||||||||||| | || || || ||||||| Sbjct 846049 ATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGA 846085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532392454400