Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq28 161 2e-34 seq27 141 2e-28 seq22 141 2e-28 >seq28 Length=1152636 Score = 161 bits (178), Expect = 2e-34 Identities = 518/793 (65%), Gaps = 23/793 (3%) Strand=Plus/Minus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 ||| ||||| || |||||| ||| ||| || |||| | || || || || || Sbjct 316107 GGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTGCACAG 316048 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 ||| ||||||||| ||||| |||| || || || ||||||| ||| || ||||| Sbjct 316047 GTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCATCCTT 315988 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| || || || || ||||| ||||| | ||||| | |||| || ||| | || Sbjct 315987 GTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAACCACACCTC 315928 Query 221893 TCTGGCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTT----TCATACCCGGTATAGA 221948 ||| ||| | || ||||||| || ||| ||| || || | |||| Sbjct 315927 -CTG-CGC-CTGGATCGTCTTGACA----CCGCGGCCTTCCGCCTCGTAGCGCTCGTAGA 315875 Query 221949 GCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCA 222008 || || ||| || || | ||| ||||| || ||| || || ||||| Sbjct 315874 GCCGCTCGAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTCCATCA 315815 Query 222009 GACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCT 222068 | |||| || | |||||| | || |||||| | |||||||||||||| ||| | Sbjct 315814 GCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGT 315755 Query 222069 GAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 ||||| || | || ||||| || ||| ||| |||| | |||| || || Sbjct 315754 AGAAGAGGTCACGGGCGCGCTGGTCATCCTTGCCCGTGTTGCGCTTCAGCAACAGGAAAC 315695 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 |||| | || || ||||| ||||| ||||||||||| | ||||| ||||| || Sbjct 315694 CAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGC 315635 Query 222189 CACCCTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCG 222247 | ||||| || | | | ||| | |||||||| ||| || | ||||| |||||| Sbjct 315634 CGCCCTGGTCTA-CGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCG 315576 Query 222248 TTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTT----ACTGGC 222303 || || |||||||| || |||||| ||| |||| | | ||| || || Sbjct 315575 TTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGC 315516 Query 222304 AGACATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCAT 222363 ||| || || || ||||| || ||||| |||||| ||| || || || Sbjct 315515 AGA----CCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTA 315460 Query 222364 GATGCCCTCCATAGAGTCCTCCTT-GACGTTCAGCAGAAAACAAGACGACATCTGAGATT 222422 |||||| || || ||| ||||| |||| || ||| || || || ||| || | | Sbjct 315459 GATGCCGTCGATGCTGTCGTCCTTCGACG-CCACCAGGAAGCACGAGCTCATTTGCGGCT 315401 Query 222423 TGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCA 222482 | | || | ||||| || || || ||| ||||||| || || ||||| | ||||||| Sbjct 315400 TCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAAGCCCATCGACATCA 315341 Query 222483 GATCGTACGTCTC 222495 ||| ||||||||| Sbjct 315340 GATTGTACGTCTC 315328 Score = 84.2 bits (92), Expect = 4e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 221100 CCTTGACCATGTGCTTGTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACA 221159 || |||| | || |||||||||||| |||| || || ||||| | | ||| | Sbjct 316705 CCATGACGAGGTACTTGTTCACCACAGGGAACTCGCCGCTCAGCACACGGCGGACGTATA 316646 Query 221160 GGTTAGAAGTGAACGGTTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGG 221219 || || ||||| ||||||| | |||||||||||| || ||||| | ||| |||| Sbjct 316645 TATTCGAGGTGAAGGGTTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGG 316586 Query 221220 TGGGCATGGGTGCCACCAGCAGACTGTTGCG 221250 | |||||||| | ||||||||| |||||| Sbjct 316585 TTGGCATGGGGGACACCAGCAGTGAGTTGCG 316555 >seq27 Length=1043456 Score = 141 bits (156), Expect = 2e-28 Identities = 379/571 (66%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| | ||||||| || | | || | |||||| | || ||||| || Sbjct 846122 GATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGAC 846063 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||| ||| |||||| | | |||| || || | | | || | ||| ||| ||||| Sbjct 846062 CTGGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGGCACTTTATCAAG 846003 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || | || || || || ||||||||| | || | Sbjct 846002 CACGTGCTCGCTTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGT 845943 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || ||| || |||||| | | ||| |||||| |||||| || || Sbjct 845942 TTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT-CTACGGATTCCAGCTGATGAT 845884 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || | ||| ||| |||||||| |||||| || Sbjct 845883 GGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGCGA 845824 Query 25773 CGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||| || | |||||| | || ||| || || || ||||| ||| ||||||| Sbjct 845823 GGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGG 845765 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||| || |||||| ||| ||||| | || ||||||||| | | || Sbjct 845764 AGTGGGCCGTGCGGTGGATTGGGAGC---AGCGCGAGCTTCCAGGAGCGGCTGATCGGCT 845708 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 |||| || ||||||||| |||| || ||| || || |||| | | |||||||| ||| Sbjct 845707 TTGCCGCAGTGGAGGGCGTCTTCTTTTCCGGATCCTTCTGCGCGC-TGTTCTGGCTGAAG 845649 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| ||| || || ||||||||||||| | |||||||| Sbjct 845648 AAGCGCGGTCTGATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGC 845589 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || |||| || || || || ||||| |||| Sbjct 845588 CTACACACGGACTTCGCGTGTCTGCTGTACA 845558 >seq22 Length=644210 Score = 141 bits (156), Expect = 2e-28 Identities = 379/571 (66%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 ||||| ||| | ||||||| || | | || | |||||| | || ||||| || Sbjct 486525 GATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGAC 486466 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 |||| ||| |||||| | | |||| || || | | | || | ||| ||| ||||| Sbjct 486465 CTGGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGGCACTTTATCAAG 486406 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 ||||| | || ||||| || | || || || || ||||||||| | || | Sbjct 486405 CACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGT 486346 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGC-CAAGTGTTTCTACGGTTTCCAGATGGCCAT 25712 |||| || || ||| || |||||| | | ||| |||||| |||||| || || Sbjct 486345 TTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTT-CTACGGATTCCAGCTGATGAT 486287 Query 25713 CGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGC 25772 || || | ||||| ||| || | ||| ||| |||||||| |||||| || Sbjct 486286 GGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGCGA 486227 Query 25773 CGAGAGAGAT-CGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 |||| || | |||||| | || ||| || || || ||||| ||| ||||||| Sbjct 486226 GGAGA-AGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGG 486168 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||||| || |||||| ||| ||||| | || ||||||||| | | || Sbjct 486167 AGTGGGCCGTGCGGTGGATTGGGAGC---AGCGCGAGCTTCCAGGAGCGGCTGATCGGCT 486111 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAG 25950 |||| || |||||||||||||| || ||| || || |||| | | |||||||| ||| Sbjct 486110 TTGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGC-TGTTCTGGCTGAAG 486052 Query 25951 CAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 || || ||||| || || || ||||||||||||| | |||||||| Sbjct 486051 AAGCGCGGTCTGATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGC 485992 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || |||| || || || || ||||| |||| Sbjct 485991 CTACACACGGACTTCGCGTGTCTGCTGTACA 485961 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844393630400