Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq28 102 1e-16 >seq28 Length=1152636 Score = 102 bits (112), Expect = 1e-16 Identities = 549/866 (63%), Gaps = 21/866 (2%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| | ||||| ||||| ||||| | ||||||||||| ||| | | || Sbjct 315265 CCTCAGCAGATGTTTATGCGTGTCGCCCTTGGCATCCACGGCAGAGATCTCAACAACGTG 315324 Query 75272 TTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTTC 75331 ||||| ||| | |||||| || | |||| ||||| || |||||||||||| Sbjct 315325 CGTGAGACGTACAATCTGATGTCGATGGGCTTTTTCACCCACGCCACTCCAACCCTCTTC 315384 Query 75332 AATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGAC 75391 || ||||| || || | ||||| ||| | |||||||| | || ||||| ||| Sbjct 315385 AACGCTGGCACCCCGAAGCCGCAAATGAGCTCGTGCTTCCTGGTGGCGTCGAAGGACGAC 315444 Query 75392 TCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGGG 75451 ||| |||| ||||| | || || | |||||| || ||| ||| ||| || Sbjct 315445 AGCATCGACGGCATCTACGATACGCTGAAGGAGTGCGCCGTGATCAGCAAGGCGGCCGGC 315504 Query 75452 GGTATTGGGATGCACATCCATGATGTGAGAGCCAATAA-ATCTCGTATTCGGGGGACAAA 75510 || ||||| |||| | || | | | ||| | || ||| || || || Sbjct 315505 GGCATTGGTCTGCATGTGCACAACATCCGCGCCGCCGGCAGCTAC-ATTGCTGGAACCAA 315563 Query 75511 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 75570 || || | || | | |||||||| ||||| || ||| ||| || ||||| || Sbjct 315564 CGGCACGTCGAACGGACTCGTACCAATGCTGCGCGTCTTCAACAACACTGCCCGCTACGT 315623 Query 75571 AAATCAAGCGGGGCGT---CGCAAGGGGTCCATCGCGGTCTACTTGGAACCATGGCATGC 75627 | | || | || || |||||||| || |||| ||||| | || || |||||||| Sbjct 315624 AGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCCTGGCATGC 315683 Query 75628 CGATATCATGGAGTTCCTTGAGTTAC-GA--CTCAACCAAGGTGACGAAGAGGCTCGGTG 75684 |||| || | | ||||| ||| | || | |||| || | || || || Sbjct 315684 CGATGTCTTTGGTTTCCT---GTTGCTGAAGCGCAACACGGGCAAGGATGACCAGCGCGC 315740 Query 75685 TAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAGGAGGG 75744 | || ||||| | | ||||||| || ||| | ||||||||||| || | | Sbjct 315741 CCGTGACCTCTTCTACGCGTTGTGGATCCCGGACTTGTTCATGAAGCGTGTCAAAAGTGA 315800 Query 75745 TGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGAC-GCGGTGGGTG 75803 || | ||| | || | || ||| | || || ||| |||| || ||| | Sbjct 315801 GGGGCGGTGGACGCTGATGGACCCTAACACGTGCCCGGGCCTCAGCGACTGCCATGGC-G 315859 Query 75804 AGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGC---CAATGCGACTG 75860 ||| ||| || |||||| || || | ||| || | | ||| ||| Sbjct 315860 AGGCGTTCGAGCGGCTCTACGAGCGCTACGAGGCGGAAGGCCGCGGTGTCAAGACGAT-- 315917 Query 75861 TACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCA 75919 |||| ||| | | || ||| || || || | || |||| ||||| || ||| Sbjct 315918 --CCAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCTCAGATCGAGACGGGCGGGCCA 315975 Query 75920 TATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATC 75979 | || || ||||||||||| || |||| ||| ||||| ||||| | || || ||| Sbjct 315976 TTCATCCTGTACAAGGATGCATGCAACAGCAAGTCAAACCAGAAGAACCTTGGGACGATC 316035 Query 75980 AAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTT 76039 ||| |||| || || ||||| |||||| | |||||||| ||| |||||||| || Sbjct 316036 AAGTGCTCGAACCTGTGCACTGAAATTGTCGAGTACACGTCGCCGGAGGAGACGGCCGTA 316095 Query 76040 TGCAATTTGGCATCAATCGCCCTTCC 76065 ||||| | || || ||||| || || Sbjct 316096 TGCAACCTCGCCTCCATCGCGCTGCC 316121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569339000800