Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq28 248 1e-60 seq26 201 1e-46 >seq28 Length=1152636 Score = 248 bits (274), Expect = 1e-60 Identities = 1005/1574 (64%), Gaps = 16/1574 (1%) Strand=Plus/Minus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || ||||| ||||| | || || || ||||| || || || || ||||| || || || Sbjct 1067367 GCCATTGGCATCGACCTGGGCACGACGTACTCGTGCGTGGGCGTGTGGCAGAACGAGCGC 1067308 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || ||||| ||| |||| ||||| || ||||| || || || ||||||||||| || || Sbjct 1067307 GTGGAGATCATCGCGAACGACCAGGGTAACCGCACGACGCCGTCGTACGTTGCGTTCACG 1067248 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || || || || | || |||||||| || || ||| || |||||||| ||| Sbjct 1067247 GACTCGGAGCGCCTGATCGGCGATGCCGCGAAGAACCAGGTGGCGATGAACCCGCACAAC 1067188 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || || ||||||||||| || ||||| ||||||| || | || || | Sbjct 1067187 ACGGTGTTCGACGCGAAGCGCCTGATTGGCCGCAAGTACGGCGACCCGGTGGTGCAGGCG 1067128 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTG-GCTGATAAGCCTATGATTAA 195597 || || ||| ||||| | | | ||| || || | | | || ||||| ||||| Sbjct 1067127 GACATGAAGCACTGGCCCT-TCAAGGTGAAGACGAAGGGCGACGACAAGCCCGTGATTTC 1067069 Query 195598 TGTTGAAT--TTCA-CGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGT 195654 || | | | || || ||||||| || | || || || || || ||||| Sbjct 1067068 GGTGCAGTACTGCAACGAGGAGAAGATC---TTCACGCCGGAGGAGATCAGCTCGATGGT 1067012 Query 195655 GTTGATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGT 195714 | || | |||||||||||||| || || | | | |||| || ||||| | || || Sbjct 1067011 GCTGCTGAAGATGAAGGAGACGGCAGAGGCGTACCTGGGCAAGCAGGTGAAGAAGGCTGT 1066952 Query 195715 TGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGC 195774 ||||| || || || ||||||| || || || || |||||||| |||||||| | | Sbjct 1066951 GGTGACGGTGCCGGCCTACTTCAACGACTCGCAGCGCCAGGCGACGAAGGACGCCGGCAC 1066892 Query 195775 TATTGCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTA 195834 ||||| || ||| | || | || ||||| || ||||||||||| || || || || Sbjct 1066891 GATTGCTGGCCTAGAGGTGCTGCGCATCATCAACGAGCCAACAGCGGCGGCCATCGCGTA 1066832 Query 195835 TGGTCTGGACAAGAACAAGGACG---AAGATAAAAATGTATTGATCTTTGATCTCGGTGG 195891 || ||||||||| | | |||| | || || || | ||||| || || || || Sbjct 1066831 CGGCCTGGACAAGGGCGACGACGGCAAGGAGCGCAACGTGCTCATCTTCGACCTTGGCGG 1066772 Query 195892 TGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTAC 195951 || ||||| ||||| | || || | || || || || || ||||| || ||||| || Sbjct 1066771 CGGCACGTTCGATGTGACGCTGCTGACGATCGACGGCGGCATCTTCGAGGTGAAGGCGAC 1066712 Query 195952 TGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTC-CGTCATTTGT 196010 ||||| || || || || || || || || || || || || ||| || Sbjct 1066711 GAACGGTGACACGCACCTTGGCGGCGAGGACTTTGACAACCGCCTCGTCACGT-TCTTCA 1066653 Query 196011 CTGATGAGTTCCGTCGAAAGAATAAG---AAAGATATTTCTGGAAATCCTAGGGCTCTTC 196067 | || |||||| || ||||| ||| || || |||| | | | || || | Sbjct 1066652 CCGAGGAGTTCAAGCGCAAGAACAAGGGTAAGGACCTTTCGTCGAGCCACCGCGCGCTGC 1066593 Query 196068 GTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAA 196127 | || || | || || || || || || || || || || || || || | || | | Sbjct 1066592 GCCGCCTGCGCACGGCGTGCGAGCGCGCGAAGCGCACGCTGTCGTCCGCGACGCAGGCGA 1066533 Query 196128 TGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCAC 196187 | | ||||| || || |||| ||| | |||||| | | | || || || || | Sbjct 1066532 CGATCGAGATCGACGCGCTGTTCGACAACGTCGACTTCCAGGCCAACATCACGCGCGCGC 1066473 Query 196188 GTTTTGAAGAGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTAC 196247 | || || ||| | | || |||| | | ||| | || || || | || | Sbjct 1066472 GCTTCGAGGAGCTGTGCGGCGACCTGTTCCGCAGCACAATGCAGCCGGTGGAGCGCGTGC 1066413 Query 196248 TTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAA 196307 | | ||||| |||||||| ||| || | || | || || ||||| || || | Sbjct 1066412 TGCAGGACGCGAAGATGGACAAGCGCTCCGTGCACGACGTGGTGCTGGTGGGCGGGTCGA 1066353 Query 196308 CCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACA 196367 | || || |||||| | || | | || ||||||| || || | |||| Sbjct 1066352 CGCGCATCCCGAAGGTGCAGTCCCTCGTGTCGGACTTCTTCGGCGGCAAGGAGCTGAACA 1066293 Query 196368 AAACGATCAACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCT 196427 | | |||||||| || || || || || || || || || || ||||| || || Sbjct 1066292 AGAGCATCAACCCCGACGAGGCTGTCGCGTACGGCGCTGCGGTGCAGGCGTTCATCCTGA 1066233 Query 196428 CAGGTGTTGACAATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCC 196487 | || | | | || | | | || ||||| || ||||| | || | ||| Sbjct 1066232 CGGGCGGCAAGAGCAAGCAGACGGAGGGCCTGCTGCTGCTGGATGTGACGCCGCTGACCC 1066173 Query 196488 TGGGTCTTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTC 196547 |||| |||| || || || || || ||||| | || | | ||||| || || | Sbjct 1066172 TGGGCATTGAGACGGCCGGCGGCGTGATGACGGCGCTGATCAAGCGCAACACGACGATCC 1066113 Query 196548 CGACTAAGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTC 196607 |||| |||||| || |||| || ||||| | || || || || || || || || | Sbjct 1066112 CGACCAAGAAGAGCCAGATCTTCTCGACGTACGCGGACAACCAGCCCGGCGTGCACATCC 1066053 Query 196608 AAGTATATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGATT 196667 | || | || || || ||| | | ||||| ||| || || || || ||||| | Sbjct 1066052 AGGTCTTCGAGGGCGAGCGCGCGATGACGAAGGACTGCCACCTGCTGGGCACGTTCGACT 1065993 Query 196668 TGACGGGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAG 196727 || | || || || | || || | || || || ||||| | || ||||| | | Sbjct 1065992 TGTCCGGCATCCCGCCAGCGCCGCGCGGCGTGCCGCAGATCGAGGTGACGTTCGACCTGG 1065933 Query 196728 ACGCAAATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGA 196787 |||| || || || || ||||| | || ||||| |||| | ||||| | | | Sbjct 1065932 ACGCGAACGGCATCCTGAACGTGTCCGCGGAGGAGAAGGGCACCGGCAAGCGCAACCATA 1065873 Query 196788 TTGTGATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAG 196847 | || ||||| |||||||| || || ||||| || || || || ||||| | | Sbjct 1065872 TCACTATCACCAACGACAAGGGCCGACTGAGCAAGGACGAGATCGAGCGCATGGTGAACG 1065813 Query 196848 ATGCGGAAAAGTAC 196861 ||||| |||||| Sbjct 1065812 ATGCGTCGAAGTAC 1065799 Score = 122 bits (134), Expect = 1e-22 Identities = 223/327 (68%), Gaps = 6/327 (2%) Strand=Plus/Plus Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||| | || | ||| | || | | ||||| | || || ||||| Sbjct 450646 AAGATGAAGGAGATCTCCGAGACATTCCTCGGCGAGAAGGTGAAGAACGCTGTGGTGACC 450705 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| |||| | || || ||||| ||||||||| ||| || || Sbjct 450706 GTGCCAGCGTACTTCAATGATGCGCAGCGCCAGGCAACAAAGGACTCTGGCAAGATCGCC 450765 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| | | || ||||| || || || |||||||| ||||| || || || Sbjct 450766 GGCCTTAACGTGGTCCGCATCATCAACGAGCCGACGGCGGCTGCCATTGCGTACGGCCT- 450824 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 ||||||| | || || ||| | | |||| || ||||||||||| |||||| Sbjct 450825 -----CAACAAGGCTGGGGAGAAGAATATCCTTGTCTTCGACCTCGGTGGTGGCACGTTT 450879 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 ||||| || | || | || || | ||| | ||||| || || || ||||| Sbjct 450880 GATGTGTCTTTGCTGACGATCGACGAGGGTTTCTTCGAGGTCGTCGCGACAAACGGTGAC 450939 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGAT 195988 || || || ||||||||||| |||||| Sbjct 450940 ACCCACCTTGGTGGTGAAGACTTCGAT 450966 >seq26 Length=1024527 Score = 201 bits (222), Expect = 1e-46 Identities = 466/694 (67%), Gaps = 10/694 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 || || || ||||| | || || || ||||| || || || || | | || || | Sbjct 401025 GCGATCGGCATCGACCTGGGCACGACATACTCGTGCGTCGGCGTCTTCAAGAACGAACAG 401084 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || ||||| || ||||| ||||| || || || || ||||| || Sbjct 401085 GTGGAAATTATTGCCAACGACCAGGGCAACCGCACAACGCCGTCCTATGTGGCCTTCACC 401144 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 || | || || || | || ||||||||||| || ||| || |||||||| | ||| Sbjct 401145 GAGACGGAGCGCCTGATCGGCGATGCCGCAAAGAACCAGGTGGCGATGAACCCAAGCAAC 401204 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || |||||||||||||| | || || ||||||| ||| | | || | Sbjct 401205 ACGGTGTTTGACGCGAAGCGCATGATCGGCCGCAAGTACGACGATCCCGACCTTCAGTCC 401264 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || ||| ||||| | | | ||| || ||| || || ||||| | || | Sbjct 401265 GACATGAAGCACTGGCCCT-TCAAGGTGA--CCGTCAAGGATGGCAAGCCCGTCATCGAG 401321 Query 195599 GTTGAATTTCACGGTGAGAAGAA-ACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTT 195657 || || | ||| || || || || ||| | || || ||||| || |||||||| | Sbjct 401322 GTCGAGTATCAGGGCCAGTCCAAGACGTTTTTC-CCGGAGGAAATCTCTGCTATGGTGCT 401380 Query 195658 GATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGT 195717 | |||||||||||||| |||||| | | | | || | || ||||| |||| ||| | Sbjct 401381 GCAGAAGATGAAGGAGACGGCGGAAGCCTACCTCGGCACGACCGTGAAGAATGCCGTTAT 401440 Query 195718 GACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTAT 195777 || || || || ||||||| || || || || ||||| || ||||| || | || || Sbjct 401441 AACCGTCCCGGCGTACTTCAACGACTCGCAGCGTCAGGCAACGAAGGATGCCGGGGCCAT 401500 Query 195778 TGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATG 195836 || || || || ||| || | || ||||| || || || || || || || || || | Sbjct 401501 CGCTGGCCTCAA-TGTGCTGCGCATCATCAACGAGCCGACCGCCGCCGCTATCGCGTACG 401559 Query 195837 GTCTGGA---CAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTG 195893 | |||| |||| | || | | ||| || || || |||||||||| || || || | Sbjct 401560 GCATGGACCGCAAGGAAGAGAAGGGAGAGAAGAACGTGCTGATCTTTGACCTTGGCGGCG 401619 Query 195894 GTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTG 195953 | ||||| ||||| | || || | || || || | ||||| || || || || | Sbjct 401620 GCACGTTCGATGTGACGCTGCTGACGATCGAGTCCGGCGTGTTCGAGGTGAAAGCGACCG 401679 Query 195954 CTGGTGATACTCATCTAGGTGGTGAAGATTTCGA 195987 | ||||| ||||| || || || || || || || Sbjct 401680 CGGGTGACACTCACCTCGGCGGCGAGGACTTTGA 401713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657862112185200