Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq28 196 6e-44 seq27 159 4e-33 seq22 156 5e-32 seq31 89.7 6e-12 >seq28 Length=1152636 Score = 196 bits (216), Expect = 6e-44 Identities = 213/280 (76%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| |||||||| ||||| || ||||| ||||| Sbjct 315633 GCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTT 315574 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| ||||||||| || || | |||| |||||||||||| | |||||| | ||| Sbjct 315573 CGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAG 315514 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | || ||||||||||||| |||| ||| | ||||||| || ||||| |||||||||| Sbjct 315513 A-CCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGC 315455 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| |||| ||||| |||| || |||||||| ||||||| | || | Sbjct 315454 CGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 315395 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||| ||||||||||| || || || || |||||| || Sbjct 315394 TGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAA 315355 >seq27 Length=1043456 Score = 159 bits (176), Expect = 4e-33 Identities = 213/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || | |||||| ||||| || || | | |||| | ||| | Sbjct 845869 GAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGCGCCTCCGGCACCTTC 845928 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||| || ||| || |||||| | |||||||||||||| ||||||| Sbjct 845929 ACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCGTCGCTCCCGGCGAAG 845988 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 ||||| || ||||||||||||||||| || || ||||| | |||| |||||||| Sbjct 845989 AAAGCGAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 846048 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || ||||| | |||||| | |||||||| || ||| || |||||| Sbjct 846049 ATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC 846108 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 | ||| | | ||||| |||| |||||||| || ||||| ||||| || Sbjct 846109 TTGCGCCAGATATCGTGGTACTGGATGGGGAAGAGAACGTAGCGGAACGGGTTCTC 846164 Score = 123 bits (136), Expect = 3e-22 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||||||||| | ||| || ||||| || ||||||| ||||||||| Sbjct 845272 GCCTTCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 845331 Query 868751 AACTCCATCCACGGGAACGGGTTG-GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 | |||||| | | || ||| || | || ||||||||||| || || |||||| | Sbjct 845332 ATCTCCAT-GAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCCCAGCGACAC 845390 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| ||||| ||||| ||||| |||||||| ||| || | || |||||||| || Sbjct 845391 AAGCAGCCGGTCCGCGACGAACTCAATGTACTGCTCCATCAGCTCAGCATTCATGCCAAT 845450 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| |||||| |||| || | | ||||| ||||| | || || || || || Sbjct 845451 CAGCCGCACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACCGCATCCACAAT 845510 Query 868930 GATCT 868934 ||||| Sbjct 845511 GATCT 845515 Score = 98.7 bits (108), Expect = 1e-14 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||||| || | | || ||||| || ||||||||| Sbjct 845590 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGGCATCAGACCGCGCTTC 845649 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || || || |||| |||||| || ||||||||| Sbjct 845650 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGACGCCCTCCACTGCGGCAAAG 845709 Query 869300 CCGATGAGCCGCTC 869313 ||||| |||||||| Sbjct 845710 CCGATCAGCCGCTC 845723 >seq22 Length=644210 Score = 156 bits (172), Expect = 5e-32 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || | |||||| ||||| || || | | |||| | ||| | Sbjct 486272 GAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGCGCCTCCGGCACCTTC 486331 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||| || ||| || |||||| | |||||||||||||| ||||||| Sbjct 486332 ACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCGTCGCTCCCGGCGAAG 486391 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||||||||||||||| || || ||||| | |||| |||||||| Sbjct 486392 AAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 486451 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || ||||| | |||||| | |||||||| || ||| || |||||| Sbjct 486452 ATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC 486511 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 | ||| | | ||||| |||| |||||||| || ||||| ||||| || Sbjct 486512 TTGCGCCAGATATCGTGGTACTGGATGGGGAAGAGAACGTAGCGGAACGGGTTCTC 486567 Score = 123 bits (136), Expect = 3e-22 Identities = 176/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||||||||| | |||||| ||||| || ||||||| ||||||||| Sbjct 485675 GCCTTCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTTGTTTTGCCCTGCAGCGAGATC 485734 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTC-TTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 | |||||| | | || ||| || | | ||||||||||| || || |||||| | Sbjct 485735 ATCTCCATGAA-GTCAAAGGGCTGAGTTGCGTTGTAGTGCTTCTCCTCGCCCAGCGACAC 485793 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| ||||| ||||| ||||| |||||||| ||| || | || |||||||| || Sbjct 485794 AAGCAGCCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCAGCATTCATGCCAAT 485853 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| |||||| |||| || | | ||||| ||||| | || || || || || Sbjct 485854 CAGCCGCACCGGAAGCGCGTCACAGATGAACTCGCGTTCGATGTTCACCGCATCCACAAT 485913 Query 868930 GATCT 868934 ||||| Sbjct 485914 GATCT 485918 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||||| || | | || ||||| || ||||||||| Sbjct 485993 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAATCCCGGCATCAGACCGCGCTTC 486052 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || || || ||||||||||| || ||||||||| Sbjct 486053 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCTCCACTGCGGCAAAG 486112 Query 869300 CCGATGAGCCGCTC 869313 ||||| |||||||| Sbjct 486113 CCGATCAGCCGCTC 486126 >seq31 Length=1340778 Score = 89.7 bits (98), Expect = 6e-12 Identities = 205/298 (69%), Gaps = 17/298 (6%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || || || || || ||||| ||||| | | ||||||| Sbjct 38722 CGAGATGGACCCGTCGATGATTCTTGGCATTTGTGCCTCCATTATCCCCTACCCCAACCA 38663 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 732469 ||||||| |||||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 38662 CAACCAGTCGCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 38604 Query 732470 GTCGCTC-AACGCCGACCACGC-CATCGACACGGTGTCGCACGCCCTGTGCTACCCGCAG 732527 ||| ||| | | || || ||| || || | || | ||| | ||||||||| Sbjct 38603 ACGCCTCGAACTTC-AACATGCGCATGGATACCACCGCCCATGTCCTTTTCTACCCGCAA 38545 Query 732528 GTGCCGCTGGTGCAGACC---GCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCGA 732582 |||||||||| ||| ||||| ||||| ||| | || ||| ||| || Sbjct 38544 AAACCGCTGGTGCGCACCAAGGCCAT----GACGTACATGCACAGCAACG-ACCTGCCCG 38490 Query 732583 TGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCCC---TACAACCAGGAGGACTC 732637 ||||| || ||| ||||||||| | || || | |||||||| |||||||| Sbjct 38489 CCGGCCACAACGCGGTGGTGGCCATCTCGTGCTACAGCGGGTACAACCAAGAGGACTC 38432 Score = 86.0 bits (94), Expect = 8e-11 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC 733151 ||||||||| | | || |||||||||||||||||| |||| | | | | || Sbjct 38019 GGCGACAAATTTTGCAGCCGGCACGGCCAAAAGGGCACCAACGGCAT--TCAGTTTCGCC 37962 Query 733152 --GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209 ||||||||||||| || | |||| ||| | | ||| ||| || | |||||||||| Sbjct 37961 AGGAGGACATGCCCT--TCAAC-CGCGACGGGGTCGTGCCGGACCTCATCATCAACCCGC 37905 Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269 ||||||| || || |||||||| ||| | | || |||| | || |||||||||| Sbjct 37904 ACGCCATTCCCTCCCGCATGACAGTGGCCCACCTGATCGAAACACTGGCCGGCAAGGTGG 37845 Query 733270 CCTGCCGCGAGGGC 733283 | ||| | ||||| Sbjct 37844 CGTGCTACAAGGGC 37831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136327736095