Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq31 123 2e-23 seq28 118 1e-21 >seq31 Length=1340778 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||||||||| | || ||||| ||||| || || || ||||||| || || || Sbjct 826131 ACCATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTGGAGGCG 826072 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | |||||| | || | || || |||||||| ||||| || || || || || || Sbjct 826071 AGCGACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 826012 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || || ||||||||||||| || ||||||||||| | | | || || || Sbjct 826011 CAGCAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTAC 825952 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||||| || ||||| || || || ||| ||||| |||| ||||||| ||| Sbjct 825951 AACATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 825901 >seq28 Length=1152636 Score = 118 bits (130), Expect = 1e-21 Identities = 371/570 (65%), Gaps = 11/570 (2%) Strand=Plus/Minus Query 139360 CACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTT-GACGCGCCTCATGAACAG 139418 ||| ||| ||| ||| |||| ||| |||| || | || ||| ||| ||||||||| Sbjct 315833 CACGTGTTAGGGTCCATCAGCGTCCAC-CGCCCCTCACTTTTGACACGCTTCATGAACAA 315775 Query 139419 ATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTT 139478 ||||| |||||||| ||| | | | || || || || || ||| ||| |||| Sbjct 315774 GTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTCATCCTTGCCCGTGTT 315715 Query 139479 ACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCAT 139538 || |||| |||||| |||| || || || ||||| || || ||||||| ||| | Sbjct 315714 GCGCTTCAGCAACAGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAA 315655 Query 139539 TGCGCCTTTCCGTTT---GCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCG 139595 ||||| || || || ||| || || || |||| || ||| || ||||| ||||| Sbjct 315654 GGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCG 315595 Query 139596 CAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGGGACTGTTGCGAGC 139655 || ||| || | || ||| ||| || |||||||| | | ||| ||| | || Sbjct 315594 CAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGC 315535 Query 139656 TCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATC 139715 |||| || || |||| | || || |||||| | ||| || | |||| || Sbjct 315534 GCGGATGTTGTGCACATGCAGACCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTC 315475 Query 139716 GCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGA 139775 | || ||||| || || ||||||||||||| | || ||||| ||||| || Sbjct 315474 CTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGA 315415 Query 139776 CGAAAGTTGCGGTAGTTTC---GTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 | ||||| | ||| ||||| || || || || ||| | ||||| ||||| Sbjct 315414 GCTCATTTGCG---GCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAA 315358 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 | ||||||||| | |||||| || || | | ||| || |||||||| Sbjct 315357 AAAGCCCATCGACATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGAT 315298 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTG 139922 || | | ||| ||||| | ||| || || Sbjct 315297 GCCAAGGGCGACACGCATAAACATCTGCTG 315268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897403169800