Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq28 174 2e-37 seq27 147 3e-29 seq22 147 3e-29 seq31 98.7 2e-14 >seq28 Length=1152636 Score = 174 bits (192), Expect = 2e-37 Identities = 201/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||| ||||| || || || ||||| Sbjct 315633 GCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTT 315574 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG-GCAA 2073655 ||| ||||||||| || || | |||| ||| | |||||| | |||||| | ||| Sbjct 315573 CGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAG 315514 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 | || |||||||||||||||||| ||| | ||||||| |||||||| |||||||||| Sbjct 315513 A-CCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGC 315455 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | ||||| |||| ||||| ||| ||| |||||||| ||||||| || | Sbjct 315454 CGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 315395 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||| || |||||||| || || || || Sbjct 315394 TGCCAGCGTTGAAGAGGGTTGGAGTGGC 315367 >seq27 Length=1043456 Score = 147 bits (162), Expect = 3e-29 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || ||||||| || ||| || ||||| | ||||||||| Sbjct 845914 GCCTCCGGCACCTTCACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCG 845973 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| ||||||| || ||||| ||||||||||||||||| || || ||||| | ||| Sbjct 845974 TCGCTCCCGGCGAAGAAAGCGAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGC 846033 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 846034 GCCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGATGCAGCTC 846093 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||||||||| ||||| |||| Sbjct 846094 TCCTGCTCCTTGTACTTGCGCCAGATATCGTGGTACTGGATGGGGAAGAGAACGTAGCGG 846153 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 846154 AACGGGTTCTCCTGCTGCAGCGGCTC 846179 Score = 131 bits (144), Expect = 3e-24 Identities = 196/275 (71%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||||| ||||| ||| | ||||| ||||| ||||||||||| | ||| Sbjct 845245 GACGTCCCCTCCGCGCTCA---TCACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCA 845301 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTG-GCCGT 793987 || ||||| || ||||||| |||||||||| |||||| | | || ||| || | || Sbjct 845302 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAA-GTCAAAGGGCTGAGTCGC 845360 Query 793988 CAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTA 794047 |||||||||||| || |||||| ||||||| ||||| |||||||| |||||||| Sbjct 845361 GTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTA 845420 Query 794048 CTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAA 794107 ||| ||| || | || |||||||| || ||| ||| || |||| || | || || Sbjct 845421 CTGCTCCATCAGCTCAGCATTCATGCCAATCAGCCGCACCGGAAGCGCGTCACAGATGAA 845480 Query 794108 CTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| ||||| | || || || | ||||||| Sbjct 845481 CTCGCGTTCGATGTTCACCGCATCCACAATGATCT 845515 >seq22 Length=644210 Score = 147 bits (162), Expect = 3e-29 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || ||||||| || ||| || ||||| | ||||||||| Sbjct 486317 GCCTCCGGCACCTTCACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCG 486376 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| ||||||| ||||| || ||||||||||||||||| || || ||||| | ||| Sbjct 486377 TCGCTCCCGGCGAAGAAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGC 486436 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 486437 GCCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGATGCAGCTC 486496 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||||||||| ||||| |||| Sbjct 486497 TCCTGCTCCTTGTACTTGCGCCAGATATCGTGGTACTGGATGGGGAAGAGAACGTAGCGG 486556 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 486557 AACGGGTTCTCCTGCTGCAGCGGCTC 486582 Score = 127 bits (140), Expect = 3e-23 Identities = 195/275 (71%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||||| ||||| ||| | || || ||||| ||||||||||| | |||| Sbjct 485648 GACGTCCCCTCCGCGCTCA---TCACACCAGCCTTCTGGTACTCGCCCACCTTCTTCTCG 485704 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTG-GCCGT 793987 || ||||| || ||||||| |||||||||| |||||| | | || ||| || | | Sbjct 485705 AAGAAGTTTGTTTTGCCCTGCAGCGAGATCATCTCCATGAA-GTCAAAGGGCTGAGTTGC 485763 Query 793988 CAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTA 794047 |||||||||||| || |||||| ||||||| ||||| |||||||| |||||||| Sbjct 485764 GTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTA 485823 Query 794048 CTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAA 794107 ||| ||| || | || |||||||| || ||| ||| || |||| || | || || Sbjct 485824 CTGCGCCATCAGCTCAGCATTCATGCCAATCAGCCGCACCGGAAGCGCGTCACAGATGAA 485883 Query 794108 CTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| ||||| | || || || | ||||||| Sbjct 485884 CTCGCGTTCGATGTTCACCGCATCCACAATGATCT 485918 Score = 102 bits (112), Expect = 1e-15 Identities = 216/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||||| || | || ||||| || ||||||||| Sbjct 485993 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAATCCCGGCATCAGACCGCGCTTC 486052 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| || || || ||||||||||| || ||||||||| Sbjct 486053 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCTCCACTGCGGCAAAG 486112 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| |||||||| || | | || | | |||||| || |||||| Sbjct 486113 CCGATCAGCCGCTCCTGGAAGCTCGCGCTGCTCCC------AATCCACCGCACGGCCCAC 486166 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| ||| | | || | ||| | ||| ||| | | || | |||||| Sbjct 486167 TCCGCCTTCTTCTGGATGCATGGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCC 486226 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||| ||| ||| ||||| | || | ||||| ||||||||||||||||| || Sbjct 486227 TCGCTGTCTGTGATGTACGTGTCCAGTAGCACAGAGTATGTCTCTGAGTGGATGTTCTCC 486286 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 486287 ATCATCAGCTGGAATCCGTAGAA 486309 >seq31 Length=1340778 Score = 98.7 bits (108), Expect = 2e-14 Identities = 207/298 (69%), Gaps = 17/298 (6%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| || || ||||| ||||||| ||||||| Sbjct 38722 CGAGATGGACCCGTCGATGATTCTTGGCATTTGTGCCTCCATTATCCCCTACCCCAACCA 38663 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| |||||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 38662 CAACCAGTCGCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 38604 Query 653014 GTCGCTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAG 653071 ||| ||| | | || || ||| || ||| | || | ||| | ||||||||| Sbjct 38603 ACGCCTCGAACTTC-AACATGCGCATGGATACCACCGCCCATGTCCTTTTCTACCCGCAA 38545 Query 653072 GTGCCGCTGGTGCAGAC---GGCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCGA 653126 |||||||||| || |||||| ||||| ||| | || ||| ||| || Sbjct 38544 AAACCGCTGGTGCGCACCAAGGCCAT----GACGTACATGCACAGCAACG-ACCTGCCCG 38490 Query 653127 TGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCCC---TACAACCAGGAGGACTC 653181 ||||| || ||| ||||||||| | || || | |||||||| |||||||| Sbjct 38489 CCGGCCACAACGCGGTGGTGGCCATCTCGTGCTACAGCGGGTACAACCAAGAGGACTC 38432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242676890365