Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq28 259 5e-64 seq22 125 7e-24 seq27 118 1e-21 >seq28 Length=1152636 Score = 259 bits (286), Expect = 5e-64 Identities = 593/872 (68%), Gaps = 33/872 (4%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518 ||||| || || || ||||| ||||||||||| || |||| || |||||| || ||||| Sbjct 316115 GCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACG-TGTACTCGACAATTTC 316057 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTT-TGCTGATTGCTTTTCCGATTGC 147577 | ||||||||| ||| || || |||||| || | ||| || || | |||| Sbjct 316056 AGTGCACAGGTTCGAGCACTTGATCG-TCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGC 315998 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AA 147634 | || || ||| | || ||| | || ||||| ||||||| || | || | ||| || Sbjct 315997 ATGCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAA 315938 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| || |||||||| | | | || | |||||| || ||||| |||| Sbjct 315937 ACCA---CACCTCCTGCGCCTGGATCGTCTTGACACCGCGGCCTTCCGCCTCGTAGCGCT 315881 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGA 147753 |||| | |||||| ||| | ||||| | ||| ||| ||||| || ||| || | || Sbjct 315880 CGTAGAGCCGCTCGAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGT 315821 Query 147754 CACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCAC 147813 | |||||||| |||| | || || || || ||| |||| ||||| | |||| Sbjct 315820 C-CATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGATCCAC 315762 Query 147814 AGCGCGTACATAAGATC----GCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAA 147869 | |||||| | || || ||||||| || |||| | ||| ||||||| |||| Sbjct 315761 AACGCGTAGAAGAGGTCACGGGCGCGCTGGTCA-TCCTTG---CCCGTGTTGCGCTTCAG 315706 Query 147870 ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTT 147929 || | | | ||| ||||| |||||||| || | |||||||| | || || || Sbjct 315705 CAACAGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTT 315646 Query 147930 ACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986 ||||| ||||| |||||| || | ||| | ||||||| || ||||||| ||| || Sbjct 315645 GCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGG 315586 Query 147987 TTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTC 148046 | | || ||| ||| ||||||||||| | || | ||||||| ||| || | | Sbjct 315585 TACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTT 315526 Query 148047 GTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAAT 148104 |||||| | | ||||||||||| |||| | ||| | || | ||||| || || Sbjct 315525 GTGCACATGCAGACCAATGCCGCCGGCCG--CCTTGCTGATCACGGCGCACTCCTTCAGC 315468 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACAT 148163 || ||||||||||||||||||||||| || |||||| | || || ||||| | ||| Sbjct 315467 GTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCC-ACCAGGAAGCACGAGCTCAT 315409 Query 148164 TTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTT 148221 |||||| || | || || || ||| ||||| ||| | ||||| || || || | Sbjct 315408 TTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAAGCCCAT 315349 Query 148222 TGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGC 148281 || ||||| ||||||||| ||| | || || |||||| ||||| || Sbjct 315348 CGA--CATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGATGCCAAGG 315291 Query 148282 GCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||||| ||||| | ||| ||||| || || || Sbjct 315290 GCGACACGCATAAACATCTGCTGAGGCCGCTC 315259 >seq22 Length=644210 Score = 125 bits (138), Expect = 7e-24 Identities = 239/344 (69%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| |||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 486039 ATGCCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 485980 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA-TTAAACTCGGACACGATCCT 47032 || |||||||| ||||| ||| | | || | ||| | | || | || | || Sbjct 485979 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCG-TGCT 485921 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGT 47092 | || || ||| ||||||| ||||||| ||||| | || ||||| || || Sbjct 485920 GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGT 485861 Query 47093 -CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGGAT 47150 || | || | |||||||| || || ||| ||| | || |||||||| || ||||| Sbjct 485860 GCGGC-TGATTGGCATGAATGCTGAGCTGATG-GCGCAGTACATTGAGTTCGTCGCGGAC 485803 Query 47151 CGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTT 47210 || ||| | ||| ||| || | ||| | | || || | | || ||||| || Sbjct 485802 CGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCAACTCAGCCCTTTGACTTC 485743 Query 47211 ATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 ||| | | || ||||| |||||||||| || || |||||||| Sbjct 485742 ATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTCTTCGAGAA 485699 >seq27 Length=1043456 Score = 118 bits (130), Expect = 1e-21 Identities = 235/343 (69%), Gaps = 4/343 (1%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| |||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 845636 ATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 845577 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA-TTAAACTCGGACACGATCCT 47032 || |||||||| ||||| ||| | | || | ||| | | || | || | || Sbjct 845576 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCG-TGCT 845518 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGT 47092 | || || ||| ||||||| ||||||| ||||| | || ||||| || || Sbjct 845517 GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTTCCGGT 845458 Query 47093 -CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATC 47151 || | || | |||||||| || || ||| | || |||||||| || ||||| | Sbjct 845457 GCGGC-TGATTGGCATGAATGCTGAGCTGATGGAGCAGTACATTGAGTTCGTCGCGGACC 845399 Query 47152 GTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGTTTA 47211 | ||| | ||| ||| || | ||| | | || || | | || ||||| || | Sbjct 845398 GGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACTTCA 845339 Query 47212 TGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 || | | || ||||| |||||||||| || || || ||||| Sbjct 845338 TGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAA 845296 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610991482600