Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq27 230 3e-54 seq22 230 3e-54 seq28 168 1e-35 seq31 95.1 2e-13 >seq27 Length=1043456 Score = 230 bits (254), Expect = 3e-54 Identities = 412/595 (69%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| || || |||||||||| ||||| Sbjct 846179 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCCATCCAGTACCACGAT 846120 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 846119 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGACCT 846061 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||||| |||||| ||||| || || || || |||||||| Sbjct 846060 GGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGGCACTTTATCAAGCA 846001 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| ||||| ||| ||||||| ||||| |||||||| | |||||| || ||| || | Sbjct 846000 CGTGCTCGC-TTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGTT 845942 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||| ||||| || ||| ||||| |||||| | || | Sbjct 845941 TCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCCAGCTGATGATGG 845882 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | || | ||||| ||| ||| ||| | | Sbjct 845881 AGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGCGAGG 845822 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| ||| | ||| | || | | ||| ||||| || | Sbjct 845821 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGGAGT 845762 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| || |||||| |||| | ||| ||| |||||||| ||||||| Sbjct 845761 GGGCCGTGCGGTGGAT----TGGGAGCAGCGCGA-GCTTCCAGGAGCGGCTGATCGGCTT 845707 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || |||||| |||| || || || |||||||| | || ||||| ||||| Sbjct 845706 TGCCGCAGTGGAGGGCGTCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAA 845647 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||| || ||| |||| || || |||||||| | ||| |||||||| Sbjct 845646 GCGCGGTCTGATG-CCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGA 845593 Score = 114 bits (126), Expect = 2e-19 Identities = 224/321 (70%), Gaps = 15/321 (5%) Strand=Plus/Minus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCGA---CGTG 1456513 ||||| || |||||||| |||| || | |||| ||| | | || ||| |||| Sbjct 845579 GACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTG 845520 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 | | ||||||| || || || || | ||||| ||||| || | || |||| Sbjct 845519 CT---GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGTGACGCGCTT 845463 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 |||||| ||| || |||||||| || ||| ||| ||||||||||| || |||| Sbjct 845462 CCGGTGCGGCTGATTGGCATGAATGCTGA-GCTGATGGAGCAGTACATTGAGTTC-GTCG 845405 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-CAACCCGTT 1456692 | ||||| ||||| | | |||| ||| | ||||||||||||| || | || ||| || Sbjct 845404 CGGACCGGCTGCTTGTGTCGCTGGGC-GAGGAGAAGCACTACAACGCGACTCAGCCCTTT 845346 Query 1456693 CCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGG- 1456751 | | |||||| |||||||||| ||||||| || ||||| || ||| |||| Sbjct 845345 GACTTC-ATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAAGAAGGTGGG 845287 Query 1456752 CGAGTACGCCAAGGCCGGCGT 1456772 ||||||| ||||||||||| Sbjct 845286 CGAGTACCAGAAGGCCGGCGT 845266 >seq22 Length=644210 Score = 230 bits (254), Expect = 3e-54 Identities = 412/595 (69%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| || || |||||||||| ||||| Sbjct 486582 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCCATCCAGTACCACGAT 486523 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 486522 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGACCT 486464 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||||| |||||| ||||| || || || || |||||||| Sbjct 486463 GGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGGCACTTTATCAAGCA 486404 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || ||||| || ||||| ||||| |||||||| | |||||| || ||| || | Sbjct 486403 CGTGCTTGCCTTCTT-CGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGTT 486345 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||| ||||| || ||| ||||| |||||| | || | Sbjct 486344 TCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCCAGCTGATGATGG 486285 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | || | ||||| ||| ||| ||| | | Sbjct 486284 AGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGCGAGG 486225 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| ||| | ||| | || | | ||| ||||| || | Sbjct 486224 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGGAGT 486165 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| || |||||| |||| | ||| ||| |||||||| ||||||| Sbjct 486164 GGGCCGTGCGGTGGAT----TGGGAGCAGCGCGA-GCTTCCAGGAGCGGCTGATCGGCTT 486110 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || ||||||||||| || || || |||||||| | || ||||| ||||| Sbjct 486109 TGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAA 486050 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||| || ||| |||| || || |||||||| | ||| |||||||| Sbjct 486049 GCGCGGTCTGATG-CCGGGATTGACGTTCAGCAACGAGCTCATCTCGCGCGACGA 485996 >seq28 Length=1152636 Score = 168 bits (186), Expect = 1e-35 Identities = 207/280 (74%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 259907 TTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG 259966 || |||||| || || || || ||||| || || ||||| ||| ||||| ||| | Sbjct 315355 TTTTTCACCCACGCCACTCCAACCCTCTTCAACGCTGGCACCCCGAAGCCGCA-AATGAG 315413 Query 259967 -TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAA 260025 |||||||| ||| ||| ||||| ||| ||||| |||||||| || ||||| || Sbjct 315414 CTCGTGCTTCCTGGTGGCGTCGAAGGACGACAGCATCGACGGCATCTACGATACGCTGAA 315473 Query 260026 GCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCG 260085 | ||||||| | ||| |||||||||||||||||| ||| | | ||||| | || Sbjct 315474 GGAGTGCGCCGTGATCAGCAAGGCGGCCGGCGGCATTGGTCTGCATGTGCACAACATCCG 315533 Query 260086 CGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCT 260145 |||||| ||| |||| | || || ||||||||| ||| ||||| || || || ||||| Sbjct 315534 CGCCGCCGGCAGCTACATTGCTGGAACCAACGGCACGTCGAACGGACTCGTACCAATGCT 315593 Query 260146 TCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 ||||| || ||| |||| || |||||||| |||||| || Sbjct 315594 GCGCGTCTTCAACAACACTGCCCGCTACGTAGACCAGGGC 315633 >seq31 Length=1340778 Score = 95.1 bits (104), Expect = 2e-13 Identities = 313/480 (65%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 1600258 CTCCATCTCTCCAAGGCGGAAGCCGCCCGAGCGCGAGCGGCCCTCGACCGGCTGCTTGGT 1600317 ||||||||| |||| | | || ||| | ||| ||| |||||| ||||| Sbjct 37546 CTCCATCTCGCCAAACCTCAGCCCACCCTCGTGCGCGCGACCCTCGGTTGGCTGACGAAC 37605 Query 1600318 GAGCATCTGGACGGGGCCGCGTGGTCGGGCGTGAATCTTGTCGATGGCCACGTGGCGCAG 1600377 ||| ||| | || || ||||| |||||||| || ||||| | | ||| ||| Sbjct 37606 CAGCGGCTGCAGCGGCCCACGTGGCCGGGCGTGGATTTTGTCTCCAGATAAGTGTTTCAG 37665 Query 1600378 GGCCTGGTAGTAGACCGGCGCCGTA-AAGATCAACGCCTCCATGGGCTCGCCGGTGTGCG 1600436 | ||| ||| || || |||| | ||||||| |||| ||| || |||||| Sbjct 37666 GCGCTGATAGAAGGTGGG-GCCGAAGAAGATCAGATGATCCAGCGGCAGCCCTGTGTGCC 37724 Query 1600437 GGTGGTAGAGCACCTCCTTGCCGTAGCGCTCGCATCCGTGGCGAGCCAACTCGGCGGCGA 1600496 | |||||| ||| |||||||| |||| | ||| || | ||| | | | | Sbjct 37725 CATTGTAGAGGCACTCGTTGCCGTACCGCTGCGACCCGAGGGCATGCAAGGCCTTGCCAA 37784 Query 1600497 CATCGTCGACGGTGACGCCGCCAAAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGG 1600556 ||||| || |||| || || || || ||| || | ||||| | ||| | Sbjct 37785 AGTCGTCCACAACGACGGAGCAGAACGGTGTCGCGTATACCTCGCCGCCCTTGTAGCACG 37844 Query 1600557 CCACCTTGCCCAGGAGGGCCTCCATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGT 1600616 |||||||||| || | || |||| | | ||| |||||||| || || ||||||| Sbjct 37845 CCACCTTGCCGGCCAGTGTTTCGATCAGGTGGGCCACTGTCATGCGGGAGGGAATGGCGT 37904 Query 1600617 GCGGGTTGATCACAATGTCGGGCGTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTC-- 1600674 |||||||||| | | ||| ||| | | ||| |||| | || ||||||||||||| Sbjct 37905 GCGGGTTGATGATGAGGTCCGGCACGACCCCGTCGCG-GTTGA--AGGGCATGTCCTCCT 37961 Query 1600675 GGTGGAGCGCACGCTGCCCACGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCC 1600734 || | | | | |||| |||||||||||||||||| || | | ||||||||| Sbjct 37962 GGCGAAACTGA--ATGCCGTTGGTGCCCTTTTGGCCGTGCCGGCTGCAAAATTTGTCGCC 38019 Score = 89.7 bits (98), Expect = 7e-12 Identities = 205/298 (69%), Gaps = 17/298 (6%) Strand=Plus/Plus Query 1601177 GAGTCCTCCTGGTTGTA---GGGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATC 1601233 |||||||| |||||||| | || || | ||||||||| ||| || ||||| Sbjct 38432 GAGTCCTCTTGGTTGTACCCGCTGTAGCACGAGATGGCCACCACCGCGTTGTGGCCGGCG 38491 Query 1601234 GGGAGGCGCGTGGCGCCG-ATG-ACGTCCTCCATGGC---GGTCTGCACCAGCGGCACCT 1601288 || ||| ||| || | ||| ||||| ||||| ||| |||||||||| | Sbjct 38492 GGCAGGT-CGTTGCTGTGCATGTACGTC----ATGGCCTTGGTGCGCACCAGCGGTTTTT 38546 Query 1601289 GCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCGGCGTT-GAGCGACAC 1601346 |||||||| | ||| | || | || || ||| ||||| | | ||| ||| | Sbjct 38547 GCGGGTAGAAAAGGACATGGGCGGTGGTATCCATGCGCATGTT-GAAGTTCGAGGCGTA- 38604 Query 1601347 GACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTG 1601406 || | || || |||||| |||||||| | ||||||| |||||||||||| ||||||||| Sbjct 38605 GATGCCCATGGCCTGCTTACCCATGGCGGACTGGTAGGTGTTGCGCGGCGACTGGTTGTG 38664 Query 1601407 GTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCG 1601464 ||||| | ||||| ||||| || || ||| || || | | ||||| | |||| Sbjct 38665 GTTGGGGTAGGGGATAATGGAGGCACAAATGCCAAGAATCATCGACGGGTCCATCTCG 38722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807824185670