Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq28 125 9e-24 seq23 84.2 3e-11 seq24 82.4 1e-10 seq16 82.4 1e-10 >seq28 Length=1152636 Score = 125 bits (138), Expect = 9e-24 Identities = 554/866 (64%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| ||| |||||||| | | Sbjct 316121 GGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACA 316062 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| || || | ||| || | ||| |||||||| | ||||| ||||| ||| || Sbjct 316061 ATTTCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTG 316002 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| ||||||||||| || ||| | ||| |||||||| |||| || | || || Sbjct 316001 TTGCATGCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCCAGGATG 315942 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTA 111465 || ||| || | | ||| |||| || | ||| | || || ||||||||||| Sbjct 315941 GCAAACCACACCTCCTGCGCCTGG----ATCGTCTTGACACCGCGGCCTTCCGCCTCGTA 315886 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 111524 |||||| || ||| |||| ||| || |||| ||| || || | ||| Sbjct 315885 GCGCTCGTAGAGCCGCTCGAACGCCTC-GCCATGGCAGTCGCTGAGGCCCGGGCACGTGT 315827 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 || | || | ||| | || | | || ||||||||||| | ||| || | Sbjct 315826 TAGGGTCCATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGA 315767 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG--TC- 111641 |||||| | | ||||| || | || || || | || |||| | || Sbjct 315766 TCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTCATCCTTGCCCGTGTTGCGCTTCA 315707 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | ||| ||||| | | || ||| || ||||| ||||| |||||||| |||| | | Sbjct 315706 GCAAC---AGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGC 315650 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || || || | || | ||| ||||| || ||| ||| || ||||| |||| Sbjct 315649 CCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCA 315590 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 111817 |||| | | || | || || || || || ||| || | ||| | Sbjct 315589 TTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAAT-GTAGCTGCCGGCGGCGCGG 315531 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || | |||| ||||| || || ||| ||| ||| || |||||| | Sbjct 315530 ATGTTGTGCACATGCAGACCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTC 315471 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| |||| ||| ||| ||||| || | |||||||| | | Sbjct 315470 AGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTC 315411 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 || ||||| | || || ||||| |||||||||||||| || ||||| |||| | || Sbjct 315410 ATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAAGCCC 315351 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 |||||| | ||| ||||| || | | ||| ||||||||||| | Sbjct 315350 ATCGACATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGATGCCAAGG 315291 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 ||||| ||||| ||||| | ||| || Sbjct 315290 GCGACACGCATAAACATCTGCTGAGG 315265 >seq23 Length=746973 Score = 84.2 bits (92), Expect = 3e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 145284 TCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATCCA 145343 || ||| |||||||||| ||||||| ||||||||||||| | ||||| ||||| ||||| Sbjct 211332 TCCTATGGTGTAGTGGTTATCACTTCGGACTTTGAATCCGAAAACCCAGGTTCGAATCCT 211273 Query 145344 GGTAGGAGC-TTTACCCA 145360 ||||||| | ||| |||| Sbjct 211272 GGTAGGACCATTTTCCCA 211255 >seq24 Length=832421 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 615058 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 615117 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 615118 CAGGTAGGAG 615127 >seq16 Length=681774 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 428703 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 428644 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 428643 CAGGTAGGAG 428634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031725236000