Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq28 237 2e-57 seq15 98.7 1e-15 >seq28 Length=1152636 Score = 237 bits (262), Expect = 2e-57 Identities = 531/773 (69%), Gaps = 26/773 (3%) Strand=Plus/Plus Query 53179 GCCTCAGTATCTTTTCATGCGCGTCGCCTTGGGTATCCACGGTGACGA-CTACACG-CGT 53236 ||||||| | | || ||||| |||||| | || |||||||| || || || ||| Sbjct 315264 GCCTCAGCAGATGTTTATGCGTGTCGCCCTTGGCATCCACGGCAGAGATCTCAACAACGT 315323 Query 53237 GTCCGTGAGACGTACGACTTAATGAGCCAAAAGTACTTT-ACGCACGCCACGCCAACCCT 53295 | |||||||||||| | | ||| | | | ||| || |||||||| |||||||| Sbjct 315324 G--CGTGAGACGTACAATCTGATGT-CGATGGGCTTTTTCACCCACGCCACTCCAACCCT 315380 Query 53296 GTTCAACGCTGGTACGAATCACCCTCAGATGTCGAGCT---GCTTCCTGGTGGCGATGAA 53352 ||||||||||| || | || || ||| |||| |||||||||||||| ||| Sbjct 315381 CTTCAACGCTGGCACCCCGAAGCCGCAAATG---AGCTCGTGCTTCCTGGTGGCGTCGAA 315437 Query 53353 GGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTG 53412 ||| ||| ||||||||||||||||| ||||| |||||||| ||| ||| |||| Sbjct 315438 GGACGACAGCATCGACGGCATCTACGATACGCTGAAGGAGTGCGCCGTGATCAGCAAGGC 315497 Query 53413 GTCGGGTGGTATCGGTATCCAC-TGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGG 53471 | | || || || ||| | || ||| | ||| |||| || ||||| || | Sbjct 315498 GGCCGGCGGCATTGGTCTGCATGTGCAC-AACATCCGCGCCGCCGGCAGCTACATTGCTG 315556 Query 53472 GGACGAACGGCGTCGCCGAT-GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCC 53530 | || |||||| || ||| ||| |||| || ||||| ||||||||||||||||| ||| Sbjct 315557 GAACCAACGGCA-CGTCGAACGGACTCGTACCAATGCTGCGCGTCTTCAACAACACTGCC 315615 Query 53531 CGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCG 53590 || ||||| ||||||| || || ||||||||||| | |||||| |||| |||||||| Sbjct 315616 CGCTACGTAGACCAGGGCGGCGGTAAGCGCAAGGGCGCCTTCGCCGTCTATCTCGAGCCC 315675 Query 53591 TGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATG 53650 ||||| ||||| | | | || || |||| | || ||| | || || | Sbjct 315676 TGGCATGCCGATGTCTTTGGTTTCCTGTTGCTGAAGCGCAACACGGGCAAGGATGACCAG 315735 Query 53651 CGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTG-G 53708 ||| ||||||||| || ||| || ||||||| |||||| | |||||| || ||| Sbjct 315736 CGCGCCCGTGACCTCTTCTAC-GCGTTGTGGATCCCGGACTTGTTCATG--AAGCGTGTC 315792 Query 53709 AGAAG-GACGAGGAGTGGTACCTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGT- 53766 | ||| || | | |||| |||||| ||| ||| |||||| ||||| ||| | | Sbjct 315793 AAAAGTGAGGGGCGGTGGACGCTGATGGACCCTAACACGTGCCCGGGCCT-CAGCGACTG 315851 Query 53767 CTACGGTGAGGAGTTTAACGAGATGTATCGGACG-TACGCAGTTCAGGGCCGCTACAAGA 53825 | | || |||| ||| | | | || || || |||| | | |||||| | Sbjct 315852 CCATGGCGAGGCGTTCGAGCGGCTCTA-CGAGCGCTACGAGGCGGAAGGCCGCGGTGTCA 315910 Query 53826 AGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAA 53885 ||| | || |||||| ||||| ||| ||| ||||| || ||| | |||||||| Sbjct 315911 AGACGATCCAGGCGCAGGAGGTGTGGTTTGCCATCCTGGAGTCTCAGATCGAGACGGGCG 315970 Query 53886 CGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 ||| | ||| ||||||||| | |||| ||| |||||||||||| Sbjct 315971 GGCCATTCATCCTGTACAAGGATGCATGCAACAGCAAGTCAAACCAGAAGAAC 316023 Score = 113 bits (124), Expect = 5e-20 Identities = 299/451 (66%), Gaps = 7/451 (2%) Strand=Plus/Plus Query 55478 GGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATG 55537 ||| |||||||||| ||||| ||| | || |||||||||||||| || | ||||| | Sbjct 316549 GGCATACGCAACTCACTGCTGGTGTCCCCCATGCCAACCGCGTCCACCTCGCAGATTCTC 316608 Query 55538 GGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCT-AGC 55596 |||||||||||| ||||| || | ||| | || || ||| | ||||| || ||| Sbjct 316609 GGCAACAACGAGTGTTTCGAACCCTTCACCTCGAATATATACGTCCGCCGTGTGCTGAGC 316668 Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656 || ||||| || | |||||| ||||||||| |||||| | | ||| Sbjct 316669 -GGCGAGTTCCCTGTGGTGAACAAGTACCTCGTCATGGACCTCATCGCGCGTGGCCTGTG 316727 Query 55657 GAACCCGCAGATCAAGACGGATATTGTGCGGAACGGGGGGTCCGTCCAGAATCTGGAG-- 55714 ||| ||| || | || || | || || || ||| || | || Sbjct 316728 GAATGAGCAAATGCGCAACGAAATCATCTCTTACAATGGTTCGATCCTCAACATTGACGG 316787 Query 55715 -ATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGTCT 55773 || || || |||||| |||||||||| ||||||||||| || ||| | | Sbjct 316788 CATCCCAGATGACCTAAAGGAGCTTTACCGGACCGTGTGGGAGATCCCGCAGCGCAAGTT 316847 Query 55774 GATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTT 55833 ||| |||||| || || || ||||||||||||||||| || |||||| |||| Sbjct 316848 GATCGACATGGCACGCGACCGCGGCCAATACATCGACCAGTCCCAATCACTGAACCTCTT 316907 Query 55834 CATGGAGA-ATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAGG 55892 | ||| || | |||||| || | | || |||| ||| ||||| ||| || | Sbjct 316908 TCTTCAGAGCCCCACCTCTGGCC-AGATCACGTCCATGCTCTTCTACGGCTGGGAGGCTG 316966 Query 55893 GACTCAAGACGGGTATGTACTATCTGCGGAC 55923 |||| ||||| ||| | |||||||| || || Sbjct 316967 GACTGAAGACTGGTGTCTACTATCTACGCAC 316997 >seq15 Length=606998 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 152079 TCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGC 152138 ||| ||||| || ||| |||| ||||||| ||||||| |||| ||| ||||| || Sbjct 506343 TCCGAACTGACCCTCCGGCACGAGCAGGTTGATGTTGTTGCCGCCAGTGAAGTTCTGTGC 506402 Query 152139 CAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGC 152198 || ||||| ||||| ||||||| | || ||||||||| |||||| | ||| | Sbjct 506403 CATCTTCACGATCGTCTCCTGCAGCGAGACCTCGCCGTGGTGAAACGCCGACGCCTCTGA 506462 Query 152199 GATGTATCCCGCCAACTGCGCCACCTT 152225 |||||| |||| || ||||||||||| Sbjct 506463 GATGTAGCCCGACAGTTGCGCCACCTT 506489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215760593000