Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq28 176 5e-39 seq31 149 7e-31 >seq28 Length=1152636 Score = 176 bits (194), Expect = 5e-39 Identities = 788/1231 (64%), Gaps = 33/1231 (3%) Strand=Plus/Minus Query 80541 CCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGG 80600 |||||| ||| ||||| |||||||| ||||| || ||| |||| |||||| Sbjct 316482 CCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGTCCTTGAAGGTCTTGTACGG 316423 Query 80601 GCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAA 80660 |||||| ||| || ||||| |||| | | || ||| || ||| ||| || Sbjct 316422 TCCCTCCTCCTTTGCGAGCTCCATCGACGACTCGACCGCGGCGAAGTAGATGGTCTCGAA 316363 Query 80661 GACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGA 80719 || || ||||| |||| |||||| | | |||||| || | ||| | || | Sbjct 316362 GATCTCCGCATTCAC-CCGCTGCGCCTCCGCCGAGACGAACGGCAGTCGCATGAGGATAA 316304 Query 80720 ACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGAT---- 80775 | |||||| |||||||| || || | |||| || |||| |||| |||| | | Sbjct 316303 AGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGGTTGCGCATGTT-GCTGCGG 316245 Query 80776 CGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTA 80835 ||| | | ||| | |||||| |||| || || || ||||| |||||||| || Sbjct 316244 CGCGCTGTCTCG---ACTGGGTAGTAGTTGCGGTCAATAACACGGTTTAGGTTGCGCGTG 316188 Query 80836 ACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGG-----TTCCCCTTC-ACA 80889 | | || || | | || ||| || ||| | | ||| | || || Sbjct 316187 ATCTGCTTCGTCACGGCGTAGAGAAGCTGGTGGTTGAACTCGCGCTTTTCAACGTCGACG 316128 Query 80890 AATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAAC 80949 || ||| || | ||| || || ||||| |||||| ||| || | || || Sbjct 316127 AAGCGCGGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTAC 316068 Query 80950 TCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGAC 81009 ||||| ||||| ||||||| || || |||| || || || ||||| |||||||||||| Sbjct 316067 TCGACAATTTCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGAC 316008 Query 81010 TTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTG 81069 ||| |||||| || |||||||| ||| | || || ||||||| ||| |||| Sbjct 316007 TTGCTGTTGCATGCATCCTTGTACAGGATGAATGGCCCGCCCGTCTCGATCTGAGACTCC 315948 Query 81070 AGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACA 81129 |||||||| ||| | ||| |||||| || | |||| |||||| ||| | Sbjct 315947 AGGATGGCAAACCACACCTCCTGCGCCTGGATCGTCTTGACACCGCGGCCTTCCGCCTCG 315888 Query 81130 TACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGGGCACTC 81188 || |||| ||| | |||||| | || || || ||||| | |||||| Sbjct 315887 TAGCGCTCGTAGAGCCGC-TCGAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGCACGT 315829 Query 81189 GTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGG 81248 ||||||| |||||| ||| || | | ||| ||||||||| ||| || Sbjct 315828 GTTAGGGTCCATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGG 315769 Query 81249 GATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCG 81308 |||||| | ||| ||| ||||| ||| |||| || || | ||| |||| | Sbjct 315768 GATCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTCATCCTTGCCCGTGTTGCGCTT 315709 Query 81309 CAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCC 81368 || | || || | | || || |||||||| ||||| ||||| ||||||| | || Sbjct 315708 CAGCAACAGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGCC 315649 Query 81369 CTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACAT 81425 |||||| || ||| ||||||| ||||| |||||||| ||| || || |||| ||| Sbjct 315648 CTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCAT 315589 Query 81426 AGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCAC 81485 || | || || | ||| ||||| || || | || || |||||| | Sbjct 315588 TGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGAT 315529 Query 81486 CTTGCTGATTGAAAGACCGATGCCACCTGACCACTT--TGAAATCTGAGCACACCGGTTC 81543 ||| | ||||| ||||| || | | ||| ||| | | |||| || ||| Sbjct 315528 GTTGTGCACATGCAGACCAATGCCGCCGGCCGCCTTGCTGATCACGGCGCACTCC--TTC 315471 Query 81544 ATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTC-ATGTCA--AGCAAGAAACAGCTT 81600 | || || || || || |||||||| || | ||| | | || || ||| | |||| Sbjct 315470 AGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCT- 315412 Query 81601 GACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAA 81660 ||| || || | | ||| || ||||| || ||||| || ||||| ||||| | Sbjct 315411 --CATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTGGCGTGGGTGAAAAAG 315354 Query 81661 CGGTTTGACATCAGGTCATAGGTTTCCTTGACG-CGTGGAATATCGTCACCGTGAATACC 81719 | | |||||||| | || || || ||| || | | ||| ||||| || || Sbjct 315353 CCCATCGACATCAGATTGTACGTCTCACGCACGTTGTTG-AGATCTCTGCCGTGGATGCC 315295 Query 81720 GATAGCTACACGCATAAACATGTACTGGGGC 81750 | || |||||||||||||| | ||| ||| Sbjct 315294 AAGGGCGACACGCATAAACATCTGCTGAGGC 315264 >seq31 Length=1340778 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || |||||||| ||||||||||| || | || ||||| ||| | | Sbjct 826128 ATGCAGATCTTCGTGAAGACGCTGACCGGCAAGACGATCGCGCTCGAGGTGGAGGCGAGC 826069 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| || || |||||||||||||| || || || |||||| Sbjct 826068 GACACGATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 826009 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || ||||| || ||||| || ||||| | || || || | ||||| || Sbjct 826008 CAGCGCCTGATCTTTGCCGGCAAGCAGCTGGAGGAGGGCCGCACGCTCTCGGACTACAAC 825949 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || || |||| || ||||| || Sbjct 825948 ATCCAGAAGGAGTCCACGCTGCACCTGGTGCTGCGCCTGCGCGGCGG 825902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310150489200