Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6 131 1e-25 seq31 102 7e-17 >seq6 Length=511626 Score = 131 bits (144), Expect = 1e-25 Identities = 349/530 (66%), Gaps = 14/530 (3%) Strand=Plus/Minus Query 29895 GGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29954 ||||||| || ||||| || || |||| || | || || || || || ||| | | Sbjct 362881 GGTAGACATGGGCGTCGCCGAGCGTGTGCACGAGTTCCCCAGGCCGCAGACCCGTGGCTT 362822 Query 29955 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 30014 ||||| | | ||||| || | |||| ||||||||| ||||| || |||||||||| Sbjct 362821 TTGCCATAAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCA 362762 Query 30015 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC--TC-CGTC---GCTCACGTAAA 30068 |||| | ||| | |||||| ||| || || ||||| || |||| | ||||||| | Sbjct 362761 TGTCGCACGAGCGCTGGTACAGCATGCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGA 362702 Query 30069 ACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGG 30128 ||||| | ||| || || || || ||||| | || | |||||||||| Sbjct 362701 ACTGAGCAAGCAAGTGACAGGGCGGCAGCGCCATCTCGTGCAGCGCGCATGGGTTCCAGG 362642 Query 30129 CGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA 30188 | | | || ||| | ||| | |||||| | ||||| |||||| | || | Sbjct 362641 CAGTTAACAGGAGGCGGCGGTCGTTTGGGTTCACCTTGATGGTCTCCACGATGGATTTGA 362582 Query 30189 GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30248 ||| |||||||| || ||| | ||| | || |||||| ||||||||| | Sbjct 362581 TCTGGTCCACCCCTTCGCCATCGTAATTCGCCTCAAACCCCTTGTACTGTGCTCCGAAGT 362522 Query 30249 GCCTCCACTGGAACCCGTACACCGGTCCCAG----GTCTCCCTCTTCCCTGTGCTCGAAG 30304 | | ||||||||| ||||| || || || || ||||| | ||| | || ||| Sbjct 362521 GGCGCCACTGGAATCCGTAGACAGGACCGAGATCCATCTCCTTATTCGCCGT----CAAG 362466 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 || | |||| | ||| || | || ||||| | |||||||| | | |||| || Sbjct 362465 CCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTACCATCCCAGATGTGAATGTCCTTGTCC 362406 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC 30414 | ||| | || |||||| || | | |||||||||||||||||| Sbjct 362405 GCCAGCAACTGGGCGTTTGTTTCGCCGCGCAGGAACCACAGCAGCTCCTC 362356 >seq31 Length=1340778 Score = 102 bits (112), Expect = 7e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52826 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52885 ||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| || Sbjct 37963 CCAGGAGGACATGCCCTTCAACCGCGACGGGGTCGTGCCGGACCTCATCATCAACCCGCA 37904 Query 52886 CGCCTTTCCCTCCAGGATGACCGT 52909 |||| |||||||| | ||||| || Sbjct 37903 CGCCATTCCCTCCCGCATGACAGT 37880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310226683220