Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6 161 9e-35 >seq6 Length=511626 Score = 161 bits (178), Expect = 9e-35 Identities = 388/585 (66%), Gaps = 14/585 (2%) Strand=Plus/Plus Query 34223 CCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGGTTC 34282 |||||| |||| ||||| || || | |||| |||||| ||||||||||||||||||| Sbjct 362314 CCGCTGTTGACAACGAAGCGCGTTTTCTGGCGCGGCGTGTGCGAGGAGCTGCTGTGGTTC 362373 Query 34283 GTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCT 34342 || | || | || ||| || || ||| || | || | | |||||||| | | Sbjct 362374 CTGCGCGGCGAAACAAACGCCCAGTTGCTGGCGGACAAGGACATTCACATCTGGGATGGT 362433 Query 34343 CACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTG 34402 |||| || || || ||||| |||| || || || | | ||||| || | Sbjct 362434 AACGGCTCGCGCGAGTTTCTCGACAGCCGCGGCTTGACGGCGAATAAGGAGATGGATCTC 362493 Query 34403 GGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGGAGCGAAGCG 34462 || || |||||||| ||||||||| | ||||| || || |||| |||| || ||| Sbjct 362494 GGTCCTGTCTACGGATTCCAGTGGCGCCACTTCGGAGCACAGTACAAGGGGTTTGAGGCG 362553 Query 34463 GACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAAC 34522 | || || | || | ||||||| | | | | | | || ||| | ||| |||| Sbjct 362554 AATTACGATGGCGAAGGGGTGGACCAGATCAAATCCATCGTGGAGACCATCAAGGTGAAC 362613 Query 34523 CCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCG 34582 || | ||| | | || || | || |||||||| | || | ||||||| Sbjct 362614 CCAAACGACCGCCGCCTCCTGTTAACTGCCTGGAACCCATGCGCGCTGCACGAGATGGCG 362673 Query 34583 CTCCCCCCGTGCCACACCCTCTGC-CAATTCTACGT---------CGCGAATGGGGAGCT 34632 || || || || ||| || ||| || |||||||| |||||| |||||| Sbjct 362674 CTGCCGCCCTGTCACTTGCT-TGCTCAGTTCTACGTGAACACGGACGCGAA---GGAGCT 362729 Query 34633 GTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGC 34692 ||||||| ||| || || || ||| | ||||||||| | || || || |||||||| || Sbjct 362730 GTCCTGCATGCTGTACCAGCGCTCGTGCGACATGGGGCTCGGCGTCCCCTTCAACATCGC 362789 Query 34693 TAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGGGAGCT 34752 ||||| |||||||| | | || || | | | ||| || |||||||| || Sbjct 362790 CTCCTACGCGCTGCTCACCATCCTTATGGCAAAAGCCACGGGTCTGCGGCCTGGGGAACT 362849 Query 34753 GGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 ||||| ||| | || || || ||| |||||| ||||||||||| Sbjct 362850 CGTGCACACGCTCGGCGACGCCCATGTCTACCGCAACCACATCGA 362894 Score = 161 bits (178), Expect = 9e-35 Identities = 388/585 (66%), Gaps = 14/585 (2%) Strand=Plus/Minus Query 6548 TCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACC 6607 ||||||||||| |||||| ||| || || || | ||| ||||| || |||||||| | Sbjct 362894 TCGATGTGGTTGCGGTAGACATGGGCGTCGCCGAGCGTGTGCACGAGTTCCCCAGGCCGC 362835 Query 6608 AACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGC 6667 | ||| | | | || || | | |||||||| ||||| || |||||||| || Sbjct 362834 AGACCCGTGGCTTTTGCCATAAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGG 362775 Query 6668 ACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCG 6727 || || | ||||||||| | ||| || || || ||| ||||||||||||| |||||| Sbjct 362774 ACGCCGAGCCCCATGTCGCACGAGCGCTGGTACAGCATGCAGGACAGCTCC---TTCGCG 362718 Query 6728 ---------ACGTAGAATTG-GCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAG 6777 |||||||| || ||| || ||| || || || ||||||||| | || Sbjct 362717 TCCGTGTTCACGTAGAACTGAGCA-AGCAAGTGACAGGGCGGCAGCGCCATCTCGTGCAG 362659 Query 6778 ATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGT 6837 | |||||||| || | || || | | ||| | |||||| ||| | ||| Sbjct 362658 CGCGCATGGGTTCCAGGCAGTTAACAGGAGGCGGCGGTCGTTTGGGTTCACCTTGATGGT 362599 Query 6838 GTCGATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCG 6897 || | | | | | | ||||||| | || | || || | ||| || |||| Sbjct 362598 CTCCACGATGGATTTGATCTGGTCCACCCCTTCGCCATCGTAATTCGCCTCAAACCCCTT 362539 Query 6898 ATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTC 6957 |||| || || ||||| | ||||||||| |||||||| || || | || ||||| Sbjct 362538 GTACTGTGCTCCGAAGTGGCGCCACTGGAATCCGTAGACAGGACCGAGATCCATCTCCTT 362479 Query 6958 CCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTT 7017 | | || || || |||| ||||| || || || |||| | | |||||||| | Sbjct 362478 ATTCGCCGTCAAGCCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTACCATCCCAGATGTG 362419 Query 7018 CACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTC 7077 | || | || ||| || || ||| || | || | || ||||||||||||||| Sbjct 362418 AATGTCCTTGTCCGCCAGCAACTGGGCGTTTGTTTCGCCGCGCAGGAACCACAGCAGCTC 362359 Query 7078 CTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGG 7122 |||| |||||| |||| | || || ||||| |||| |||||| Sbjct 362358 CTCGCACACGCCGCGCCAGAAAACGCGCTTCGTTGTCAACAGCGG 362314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448262203885200