Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq31 102 7e-17 seq6 96.9 3e-15 >seq31 Length=1340778 Score = 102 bits (112), Expect = 7e-17 Identities = 113/146 (77%), Gaps = 6/146 (4%) Strand=Plus/Minus Query 53531 ATGGGCGACAAGTTT-GCATCCTTCACGGCGCAAAAGGGGACATGCGGAG--CGGTCCTG 53587 || |||||||| ||| ||| || |||||| |||||||| || ||| | || | Sbjct 38022 ATCGGCGACAAATTTTGCAGCCGGCACGGC-CAAAAGGGCACCAACGGCATTCAGTTTCG 37964 Query 53588 ACTCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCC 53647 | ||||||||||||||||| || |||||||| ||||| ||||||||||||||||| Sbjct 37963 CC--AGGAGGACATGCCCTTCAACCGCGACGGGGTCGTGCCGGACCTCATCATCAACCCG 37906 Query 53648 CACGCCTTTCCCTCCAGGATGACGGT 53673 |||||| |||||||| | ||||| || Sbjct 37905 CACGCCATTCCCTCCCGCATGACAGT 37880 >seq6 Length=511626 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 29632 CTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGT 29691 ||||||||| | |||| | || | ||||| ||||||| || || || || || || Sbjct 362916 CTCGAGCTGCACTTTCAGAGCATCGATGTGGTTGCGGTAGACATGGGCGTCGCCGAGCGT 362857 Query 29692 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29751 ||| || | || || || || || ||| | | ||||| | | ||||| || | Sbjct 362856 GTGCACGAGTTCCCCAGGCCGCAGACCCGTGGCTTTTGCCATAAGGATGGTGAGCAGCGC 362797 Query 29752 GTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTG 29811 |||| ||||||||| ||||| || |||||||||||||| | || | |||||| ||| Sbjct 362796 GTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCATGTCGCACGAGCGCTGGTACAGCAT 362737 Query 29812 GCACGAGAGCTC--TC-CGTC---GCTCACGTAAAACTGA 29845 ||| || ||||| || |||| | ||||||| |||||| Sbjct 362736 GCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGAACTGA 362697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163026746010