Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq6 125 5e-24 seq31 102 6e-17 >seq6 Length=511626 Score = 125 bits (138), Expect = 5e-24 Identities = 371/566 (66%), Gaps = 16/566 (3%) Strand=Plus/Minus Query 27126 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 27185 ||||||||| ||||| | || | ||| | ||||||| || ||||| || || || Sbjct 362916 CTCGAGCTGCACTTTCAGAGCATCGATGTGGTTGCGGTAGACATGGGCGTCGCCGAGCGT 362857 Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 ||| || | || || || || || ||| | | ||||| | | ||||| || | Sbjct 362856 GTGCACGAGTTCCCCAGGCCGCAGACCCGTGGCTTTTGCCATAAGGATGGTGAGCAGCGC 362797 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||| ||||||||| ||||| || |||||||||||||| | ||| | |||||| ||| Sbjct 362796 GTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCATGTCGCACGAGCGCTGGTACAGCAT 362737 Query 27306 ACACGAGAGCTC--TC-CATC---GCTTACGTAAAACTGACATATGGCGTGGCACGGAGG 27359 || || ||||| || | || | | ||||| |||||| | ||| || || || Sbjct 362736 GCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGAACTGAGCAAGCAAGTGACAGGGCGG 362677 Query 27360 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 27419 || ||||| | || | ||||||||||| | | || ||| | ||| | Sbjct 362676 CAGCGCCATCTCGTGCAGCGCGCATGGGTTCCAGGCAGTTAACAGGAGGCGGCGGTCGTT 362617 Query 27420 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479 |||||| | ||||| |||||| | || | ||| |||||||| || ||| Sbjct 362616 TGGGTTCACCTTGATGGTCTCCACGATGGATTTGATCTGGTCCACCCCTTCGCCATCGTA 362557 Query 27480 GTCTACCCTC-ATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCG 27538 | | |||| | || |||||| ||||||||| || | ||| ||||| ||||| || | Sbjct 362556 AT-TCGCCTCAAACCCCTTGTACTGTGCTCCGAAGTGGCGCCACTGGAATCCGTAGACAG 362498 Query 27539 GTCCCAG----GTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 27594 | || || ||||| | ||| | || ||||| | |||| | ||| || | Sbjct 362497 GACCGAGATCCATCTCCTTATTCGCCGT----CAAGCCGCGGCTGTCGAGAAACTCGCGC 362442 Query 27595 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 27654 || ||||| | |||||||| | | |||| || | ||| | || |||||| Sbjct 362441 GAGCCGTTACCATCCCAGATGTGAATGTCCTTGTCCGCCAGCAACTGGGCGTTTGTTTCG 362382 Query 27655 CCTCTGACGAACCACAGCAGCTCCTC 27680 || | | |||||||||||||||||| Sbjct 362381 CCGCGCAGGAACCACAGCAGCTCCTC 362356 >seq31 Length=1340778 Score = 102 bits (112), Expect = 6e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||||||||||||||||||| || |||||||| ||||| ||||||||||||||||| || Sbjct 37963 CCAGGAGGACATGCCCTTCAACCGCGACGGGGTCGTGCCGGACCTCATCATCAACCCGCA 37904 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 |||| |||||||| | ||||| || Sbjct 37903 CGCCATTCCCTCCCGCATGACAGT 37880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507042382085