Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq31 179 8e-40 seq28 100 6e-16 seq22 100 6e-16 seq27 96.9 7e-15 seq15 89.7 1e-12 >seq31 Length=1340778 Score = 179 bits (198), Expect = 8e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || |||||||| || ||||| || | |||| || || |||||||||||||| | Sbjct 825902 CCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAG 825961 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||||||||||| || || ||||| ||| Sbjct 825962 AGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGG 826021 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| |||||||| || || ||| | ||||| ||||| || || || Sbjct 826022 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCACC 826081 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| | ||||||||| || |||| ||||| ||||| |||||||| Sbjct 826082 TCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCAT 826128 >seq28 Length=1152636 Score = 100 bits (110), Expect = 6e-16 Identities = 213/316 (67%), Gaps = 4/316 (1%) Strand=Plus/Minus Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 || |||||||||||||| ||||||| || ||| |||||||| || ||||| Sbjct 894536 GCGTGGTCCTTGCCACCGTGCAGCCGCGTACCGAACTGACCGTCCTTGCGTAGCAGCGGA 894477 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 | |||||||||||| ||| | ||||| ||||| ||||| ||| | ||| || | Sbjct 894476 ACGTTGTTGCTACCCACGAAGTCCTGCGCCATTCCGACGATCGTCTGCACAAGCGACTGC 894417 Query 273921 TCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAACCACTGAACTGAGCAACCTTCACA 273980 |||||||| || |||||| ||| || | || || || | ||| | ||||| | | Sbjct 894416 TCGCCGTGATGGTAGGCGGAGTGCTCCGAGACGTAGCCGGCAAGCTGCACCACCTTGATA 894357 Query 273981 TCGCTCGTCAAGTTTCGCTTGAATGCGGAATACAACACCTTCCGCTGCGAGGGCTTGAAC 274040 | || |||||| |||||||| ||| | | | ||| || || ||||||||| Sbjct 894356 GAGTTCACCAAGTTACGCTTGAAGCAGGAGAAGAGGATCTTGCGTTGGCCGGGCTTGAAG 894297 Query 274041 CCATCAACGACCGATGGAATACTGCGTTCCAAATCATACCGA--GAGAACAAAATCAGTT 274098 || |||| | || |||||||| || | || ||| ||||| | || || | Sbjct 894296 CCGTCAATCGCACTCGGGATACTGCGCTCGCAGTC--GGCGATGGAGAAGAGGATGAGCT 894239 Query 274099 CCTTGTCAATGAAGTC 274114 ||||||| | ||||| Sbjct 894238 CCTTGTCCACAAAGTC 894223 >seq22 Length=644210 Score = 100 bits (110), Expect = 6e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| || ||||| |||| || || || |||||||||||||| || |||| | Sbjct 485886 GAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGCG 485827 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || || || ||||| || || || | | ||| |||| || | ||||| || Sbjct 485826 CAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTAC 485767 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||| | || |||||| | || || || ||||| ||||| |||||| Sbjct 485766 AACGCAACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACAAACTTC 485707 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 ||||| ||| || |||| || || | | | ||||| Sbjct 485706 TTCGAGAAGAAGGTGGGCGAGTACCAGAAGGCTGGTGT 485669 >seq27 Length=1043456 Score = 96.9 bits (106), Expect = 7e-15 Identities = 150/213 (70%), Gaps = 1/213 (0%) Strand=Plus/Minus Query 230193 GAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTGATCTCATGGGG 230252 |||||||| || ||||| |||| || || || |||||||||||||| || |||| | Sbjct 845483 GAGTTCATCTGTGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCTGAGCTGATGGAG 845424 Query 230253 CAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACGAGAAAGTGTAT 230312 || || || || ||||| || || || | | ||| |||| || | ||||| || Sbjct 845423 CAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTAC 845364 Query 230313 AACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGAAAACTAACTTC 230372 ||| | | | ||||| | || |||||| | || || || ||||| ||||| |||||| Sbjct 845363 AACGCGACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 845304 Query 230373 TTCGAAAAGCGTGTCAGCGATTATCA-AAGGCC 230404 || || ||| || |||| || || |||||| Sbjct 845303 TTTGAGAAGAAGGTGGGCGAGTACCAGAAGGCC 845271 >seq15 Length=606998 Score = 89.7 bits (98), Expect = 1e-12 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 273801 GCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGACCCTCGGGCAGTAGCCAGTTT 273860 || ||||| || || |||| | | || || ||||||||||| |||| ||| ||| Sbjct 506314 GCGTGGTCGTTACCGAGTTGCTGTCGAGATCCGAACTGACCCTCCGGCACGAGCAGGTTG 506373 Query 273861 ATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACGATAGTCCCCTGAAGGGATACC 273920 |||||||||| || | | | ||| ||||| |||||||| ||| |||| || || ||| Sbjct 506374 ATGTTGTTGCCGCCAGTGAAGTTCTGTGCCATCTTCACGATCGTCTCCTGCAGCGAGACC 506433 Query 273921 TCGCCGTGGTGA 273932 |||||||||||| Sbjct 506434 TCGCCGTGGTGA 506445 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046738730602890