Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20panamensis_20[genbank_20GCA_5F000755165.1_202014-09-16] 35 sequences; 30,688,794 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq31 192 5e-44 seq9 105 6e-18 >seq31 Length=1340778 Score = 192 bits (212), Expect = 5e-44 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||||||| ||||||||| ||||| ||||| || Sbjct 825901 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGA 825960 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || |||||||||||||| || ||||||||||| ||||||| || Sbjct 825961 GAGCGTGCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGG 826020 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | || |||||||||| ||| || ||||| | | |||||||||| |||||| Sbjct 826021 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGCCTCCAC 826080 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||| | || ||||| || || ||||||||||| ||||| ||||||||| Sbjct 826081 CTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 826129 >seq9 Length=561584 Score = 105 bits (116), Expect = 6e-18 Identities = 160/230 (70%), Gaps = 27/230 (12%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||||||||| || || | |||||| ||||| ||| ||||||||| ||||| ||||| || Sbjct 347102 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCCTTCTGGATGTTGTAGTCCGA 347161 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||||||||||||| || Sbjct 347162 GAGCGTGCGTCCCTCCTCCAGCTGCTTGCCGGCG------------TG------------ 347197 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | ||||||||||||| || || || | ||||| | | |||||||||| |||| Sbjct 347198 -ATGCTCTCCTTGTCC-TGGTTCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGTTCCA 347255 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| | || ||||| || || ||||||||||| | ||| |||||| || Sbjct 347256 CCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCATGAAGATCTGCGTG 347305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303797742000