Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 336 4e-87 seq17 242 7e-59 seq22 143 5e-29 >seq23 Length=1180511 Score = 336 bits (372), Expect = 4e-87 Identities = 1045/1586 (66%), Gaps = 51/1586 (3%) Strand=Plus/Minus Query 243869 AGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG-GCCATGGT 243927 ||||||||||| || || ||| |||||||| | | | | || || ||| |||||| Sbjct 328821 AGAAAGAGGTTCAGTGATTGGGACTGGTCGATGTATTGGCCGCGGTC-GCGTGCCATGTC 328763 Query 243928 GATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGG 243987 ||| | | ||| | ||||| || | ||| ||| | ||| |||| || || Sbjct 328762 GATCAACTTGCGCTGCGGGATCTCCCACACGGTCCGGTAAAGCTCCTTTAGGTCATCTGG 328703 Query 243988 GAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 || || || ||||| | | ||| || |||| ||||| | | ||||||| | || Sbjct 328702 GATGCCGTCAATGTTGAGGATCGAACCATTGTAAGAGATGATTTCGTTGCGCATTTGCTC 328643 Query 244048 GTTCCACAGGCCCAAGCGCTCC-AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106 ||||||||||| | |||| || || ||| |||| | |||||||||| | |||| Sbjct 328642 ATTCCACAGGCC-ACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACT 328584 Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGT 244166 | || |||||| ||||| ||| | || | ||| || |||| | ||| ||| Sbjct 328583 CGCCGCTCAGCACACGGCGGACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGT 328524 Query 244167 TGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCA 244226 |||| || ||||||| ||| ||| || |||||||| ||||||||||| ||| | | Sbjct 328523 TGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTA 328464 Query 244227 CGCCGTGCCTCTGGATG-CGGAGTCT--GAGCTCGTTCCAGTCCCACATGCCCGAGAG-G 244282 ||| | ||| | ||| | ||| ||| | ||||||||| || | | Sbjct 328463 TGCC-TACCT--GCATGACCTTCTCTTTGAGGCTGGCCCAGTCCCAGCGACCGCTGTTCG 328407 Query 244283 TCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCC 244342 || |||||| |||||| || |||||||| | |||| ||| | ||||||||| Sbjct 328406 GCCGCGCGTTCTT----CCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGCCC 328351 Query 244343 TCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCT-CTCGTCGAGGGCGGC 244401 | | ||||| ||| || || || || || |||| || | | |||| ||||| Sbjct 328350 TTGAAGGTCTCGTACGGTCCCTCCTCCTTTGCGAGCTC-CATCGACGACTCGACCGCGGC 328292 Query 244402 GTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCTT-GCCGCAGGTGAAG 244459 | |||||||||||||||||||| | ||||| ||| | |||| |||| || ||| Sbjct 328291 GAAGTAGATGGTCTCGAAGATCTCCGCGTTCACC-CGCTGCGCCTCCGCCG-AGACGAAC 328234 Query 244460 GGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTG 244519 || | | ||| | || ||| ||| || || ||||| || || | |||||||| | | Sbjct 328233 GGCAGTCGCATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGG 328174 Query 244520 TGTCGCTTGTTGGAGCGCATGGCT-TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTT 244578 | ||| ||||| ||| ||| || | || ||||| |||||| ||| || || Sbjct 328173 TTGCGCATGTTGCTGCGGCGCGCTGTCTCG-ACTGGGTAGTAGTTGCGGTCAATAACACG 328115 Query 244579 GTTGAGGTTGCGGGTGATCATGCGGACG--ACGTCGGCCAGCAGCTGAAAGTCGTACTCG 244636 ||| |||||||| |||||| ||| || ||| || || ||||| || | ||||| Sbjct 328114 GTTTAGGTTGCGCGTGATC-TGCTT-CGTCACGGCGTAGAGAAGCTGGTGGTTGAACTCG 328057 Query 244637 TAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTG 244696 || || ||| | || | || || |||| | ||| |||||| Sbjct 328056 CGCTTTTCAACGTCGACG-----------AAGCGCGGC-AGCGCGATGGAGGCGAGGTTG 328009 Query 244697 CAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCAC 244756 || |||||| |||||||| ||||||| |||||| || ||||| ||||| |||| Sbjct 328008 CATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGCAC 327949 Query 244757 TTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||| || || |||| || || || |||||| |||||| || |||||||| || ||| Sbjct 327948 TTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCATCCTTGTACAGGATG 327889 Query 244817 AAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTG 244876 || ||||| || ||||||| ||| | | |||| | ||| | ||| |||| | Sbjct 327888 AACGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAACCACACCTCCTGCGCCTGG 327829 Query 244877 ACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGG 244936 | |||| || | | || || ||||||||||| ||| || ||||||| | | Sbjct 327828 ATCGTCTTGACACCGCGTCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCTCG 327769 Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 || | ||| ||||| ||||||| ||| ||| || ||||| |||| | Sbjct 327768 CCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGTCCATCAGCGTCCAC-CGCCCCTC 327710 Query 244997 TCCTT-GACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGT 245055 | || ||| | || |||||| | ||| |||||||| | || | ||||||||| | || Sbjct 327709 ACTTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGC 327650 Query 245056 CCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 | ||| || ||| || ||||| | ||||| || || ||||||| ||| | || Sbjct 327649 GCGCTGGTCATCCTTTCCTGTGTTGCGCTTCAGCAACAGGAAACCAAAGACATCGGCATG 327590 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCCCTGGTCCACCAT 245175 ||||||||| | ||||| |||| |||||| ||||| ||| |||||||| || Sbjct 327589 CCAGGGCTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTA 327530 Query 245176 CCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGAGTGGCCGTTGG 245234 | | || | |||||||| |||||| | || || | ||||| || |||||||| Sbjct 327529 GCGGGC-AGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGG 327471 Query 245235 TGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATG----CCTAGTCCG 245290 | || |||||| ||| | | | || |||| || ||||| || | ||| Sbjct 327470 TTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTG----TGCACATGCAGACCAATACCG 327415 Query 245291 CCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCTCCATGCTG 245350 ||||| |||| ||| | |||||| ||| | || || ||||| || |||||| Sbjct 327414 CCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTG 327355 Query 245351 TCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGCACGAGTTG 245410 || |||| | ||| ||||| ||| || || ||||| ||| ||| | |||| Sbjct 327354 TCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTG 327295 Query 245411 AACAGAGTGGGGCTGGCGTGGGTAAA 245436 || || || || | |||||||| || Sbjct 327294 AAGAGGGTTGGAGTAGCGTGGGTGAA 327269 >seq17 Length=659812 Score = 242 bits (268), Expect = 7e-59 Identities = 580/867 (67%), Gaps = 15/867 (2%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| || ||||||| || | || || || |||||| | Sbjct 495534 ATCCAGTACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTA 495475 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | | ||| || ||| | Sbjct 495474 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGG 495415 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 || |||| || | || ||||||||||||| |||||||| ||| ||||| Sbjct 495414 CACTTTATCAAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAAT 495355 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || ||| | ||||||| || ||| || ||||||||| |||||||| ||| Sbjct 495354 CTTGCCCAGCGTTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTC 495295 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||| | || |||||| | ||||| ||| ||| | || || ||||||||||| Sbjct 495294 CAGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATC 495235 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 || || ||| ||||| | | || || ||||||| || |||||| || Sbjct 495234 ACAGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAG 495175 Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGG 42704 ||||||||||| ||||| | ||||| | ||| | ||| | ||| ||| || Sbjct 495174 AAGAAGGCGGAGTGGGCCGTGCGGTGGATTGGGAG---CAGCGCGAGCTTCCAGGAGCGG 495118 Query 42705 CTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTC 42764 ||| | | |||| |||| || |||||||||||||| || || ||||| | | | ||| Sbjct 495117 CTGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTC 495058 Query 42765 TGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 ||||| ||| || ||| | |||||| || | || ||| ||||| |||||| | Sbjct 495057 TGGCTGAAGAAGCGCGGTCT-GATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCG 494999 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCTCAGGCA 42880 |||||||| || || | |||||| || || || |||| |||| ||| ||| ||| Sbjct 494998 CGACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAACTCG---CACATCAAGCA 494942 Query 42881 CAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGA 42940 ||| | || ||||| || | || ||||| ||| || ||| | ||||| || Sbjct 494941 CAAACTGCCGCGCGAGCGCGTGCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGA 494882 Query 42941 GTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAA 43000 |||| || | |||| || || ||| | |||||||| ||| || ||| | Sbjct 494881 GTTCATCTGCGACGCGCTTCCGATGCGGCTGATTGGCATGAATGCCGAGCTGATGGCGCA 494822 Query 43001 GTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGG-TCTCAGCCGCCTCTAC 43058 |||||| ||| |||||| |||| || | |||| | | |||| || | | |||| Sbjct 494821 GTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTC-GCTGGGCGAGGAGAAG-CACTAC 494764 Query 43059 AACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTT 43118 ||| || | ||||| ||||| ||||||| |||||| || ||||||| || ||||| Sbjct 494763 AACGCGACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTC 494704 Query 43119 TTCGAGAAGCGCGTCGCCGACTACCAG 43145 || |||||| || | ||| |||||| Sbjct 494703 TTTGAGAAGAAGGTGGGCGAGTACCAG 494677 >seq22 Length=1192232 Score = 143 bits (158), Expect = 5e-29 Identities = 309/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| ||||| | | |||| |||| || |||||||||||||| || || ||||| | | Sbjct 920746 GAGCGGCTGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCG 920687 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 | |||||||| ||| || ||| | |||||| || | || ||| ||||| ||||| Sbjct 920686 CTGTTCTGGCTGAAGAAGCGCGGTCT-GATGCCGGGGTTGACGTTCAGCAACGAGCTCAT 920628 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT---TCTCGAGCCACCT 42874 | | |||||||| || || | |||||| || || || |||| |||| ||| | Sbjct 920627 CTCGCGCGACGAGGGCCTACACACGGACTTCGCGTGTCTGCTGTACAACTCG---CACAT 920571 Query 42875 CAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 || |||||| | || ||||| || | || ||||| ||| || ||| | ||||| Sbjct 920570 CAAGCACAAACTGCCGCGCGAGCGTGTGCTGGAGATCATTGTGGATGCGGTGAACATCGA 920511 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 |||||| || | |||| || ||| ||| | |||||||| ||| || || Sbjct 920510 ACGCGAGTTCATCTGCGACGCGCTTCCGGTGCGGCTGATTGGCATGAATGCCGAGCTGAT 920451 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCT-CCTGTGCCAGATGGG-TCTCAGCCGC 43052 | ||||||| ||| |||||| |||| || | |||| | | |||| || | Sbjct 920450 GGCGCAGTACATTGAGTTCGTCGCGGACCGGCTGCTTGTGTC-GCTGGGCGAGGAGAAG- 920393 Query 43053 CTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACC 43112 | ||||||| || | ||||| ||||| ||||||| |||||| || ||||||| || Sbjct 920392 CACTACAACGCGACTCAGCCCTTTGACTTCATGGAGATGATCTCGCTGCAGGGCAAAACG 920333 Query 43113 AACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||| || |||| | || | ||| |||||| Sbjct 920332 AACTTCTTTGAGAGGAAGGTGGGCGAGTACCAG 920300 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338763243120