Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq34 138 9e-28 seq27 89.7 4e-13 >seq34 Length=527293 Score = 138 bits (152), Expect = 9e-28 Identities = 399/608 (66%), Gaps = 16/608 (3%) Strand=Plus/Minus Query 29787 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 29846 ||||||||| ||||| | || | ||| | ||||||| || ||||| || || || Sbjct 366367 CTCGAGCTGCACTTTCAGAGCATCGATGTGGTTGCGGTAGACATGGGCGTCGCCGAGCGT 366308 Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| || | || || || || || ||| | | ||||| | | ||||| || | Sbjct 366307 GTGCACGAGTTCGCCAGGCCGCAGACCCGTGGCTTTTGCCATAAGGATGGTGAGCAGCGC 366248 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||| ||||||||| ||||| || |||||||||||||| | ||| | |||||| ||| Sbjct 366247 GTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCATGTCGCACGAGCGCTGGTACAGCAT 366188 Query 29967 ACACGAGAGCTC--TC-CGTC---GCTCACGTAAAACTGACACATGGTGTGGCACGGAGG 30020 || || ||||| || |||| | ||||||| |||||| | ||| || || || Sbjct 366187 GCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGAACTGAGCAAGCAAGTGACAGGGCGG 366128 Query 30021 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 30080 | ||||| | || | ||||||||||| | | || ||| | ||| | Sbjct 366127 CAACGCCATCTCGTGCAGCGCGCATGGGTTCCAGGCAGTTAACAGGAGGCGGCGGTCGTT 366068 Query 30081 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 30140 |||||| | ||||| |||||| | || | ||| |||||||| || ||| Sbjct 366067 TGGGTTCACCTTGATGGTCTCCACGATGGATTTGATCTGGTCCACCCCTTCGCCATCGTA 366008 Query 30141 GTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGG 30200 | ||| | || |||||| ||||||||| || | ||||||||| ||||| || || Sbjct 366007 ATTCGCCTCAAACCCCTTGTACTGTGCTCCGAAGTGGCGCCACTGGAATCCGTAGACAGG 365948 Query 30201 TCCCAG----GTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256 || || ||||| | ||| | || ||||| | |||| | ||| || | | Sbjct 365947 GCCGAGATCCATCTCCTTATTCGCCGT----CAAGCCGCGGCTGTCGAGAAACTCGCGCG 365892 Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 30316 | ||||| | |||||||| | | |||| || | ||| | || |||||| | Sbjct 365891 AGCCGTTACCATCCCAGATGTGAATGTCCTTGTCCGCCAGCAACTGGGCGTTTGTTTCGC 365832 Query 30317 CTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGTG 30375 | | | |||||||||||||||||| ||| ||| | ||| || || | ||| || || Sbjct 365831 CGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAAACACGCTTCGTTGTC 365773 Query 30376 AGGAGGGG 30383 | ||| || Sbjct 365772 AAGAGCGG 365765 >seq27 Length=1625307 Score = 89.7 bits (98), Expect = 4e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52112 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52171 ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||| || Sbjct 72789 CCAGGAGGACATGCCCTTCAATCGCGACGGCGTCGTGCCGGACCTCATCATCAACCCGCA 72730 Query 52172 CGCCTTTCCATCCAGGATGACCGT 52195 |||| |||| ||| | ||||| || Sbjct 72729 CGCCATTCCCTCCCGCATGACAGT 72706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617415739001