Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq23 260 3e-64 seq17 147 4e-30 >seq23 Length=1180511 Score = 260 bits (288), Expect = 3e-64 Identities = 972/1496 (65%), Gaps = 57/1496 (4%) Strand=Plus/Minus Query 212694 AGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCG-GCCATGTCTATGAT 212752 |||||||| || || |||||| ||| || || | | ||| ||| |||||||| || | Sbjct 328815 AGGTTCAGTGATTGGGACTGGTCGATGTATTGGCCGCGGTC-GCGTGCCATGTCGATCAA 328757 Query 212753 ATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCC 212812 | | ||| | || ||||||||||||| | | | || || ||||| ||||||| ||| Sbjct 328756 CTTGCGCTGCGGGATCTCCCACACGGTCCGGTAAAGCTCCTTTAGGTCATCTGGGATGCC 328697 Query 212813 GGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAGGCGCATGTCCTCGTTCCA 212872 | ||||| | | || || ||| | | | | |||||| | ||| ||||| Sbjct 328696 GTCAATGTTGAGGATCGAACCATTGTAAGAGATGATTTCGTTGCGCATTTGCTCATTCCA 328637 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 ||||| | | ||| | |||| |||| ||| || | |||| || || Sbjct 328636 CAGGCCACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACTCGCCGCT 328577 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 ||||| | | ||| | || || ||| |||| |||| | ||||||||| || || Sbjct 328576 CAGCACACGGCGGACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGTTGCCGAG 328517 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTCA---CTCC 213049 |||||| | ||| || || |||||||| | |||||| || ||| | | || | Sbjct 328516 AATCTGCGAGGTGGACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTATGCCTAC 328457 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 ||| | | | | || ||| ||||||||||| | ||| | | ||| | Sbjct 328456 CTGCATGACCTTCT--CTTTGAGGCTG-GCCCAGTCCCAGC-----GACCGCTGTTCGGC 328405 Query 213110 CTTCACGTTC---CACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTA 213166 | | ||||| ||||| || ||||||| ||||| | ||| | |||||||||| | | Sbjct 328404 CG-CGCGTTCTTCCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGCCCTTGAA 328346 Query 213167 AGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTA 213226 | ||| || || | |||||| || ||||| |||| || | || ||| |||| Sbjct 328345 GGTCTCGTACGGTCCCTCCTCCTTTGCGAGCTCCATCGACGACTCGACCGCGGCGAAGTA 328286 Query 213227 GATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCAT 213286 |||||| || || |||||| ||| | | || ||||| | || ||| |||| Sbjct 328285 GATGGTCTCGAAGATCTCCGCGTTCACCCGCTGCGCCTCCGCCGAGACGAACGGCAGTCG 328226 Query 213287 CATGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAG 213346 |||| | || ||||| || ||||| || || | |||||||| | || | || Sbjct 328225 CATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGGTTGCGCAT 328166 Query 213347 GTTAGACTTGGAGCACTC-CTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGT 213405 ||| | || || || ||| | ||||| |||||| ||| || | ||| |||| Sbjct 328165 GTT-GCTGCGGCGCGCTGTCTCGACTGGGTAGTAGTTGCGGTCAATAACACGGTTTAGGT 328107 Query 213406 TGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACG---TAGCCCC 213462 |||| ||| | || || || | || || ||| |||||| || | | Sbjct 328106 TGCGCGTGATCTGCTTCGTCACGGCGTAGAGAAGCTGGTGGTTGAACTCGCGCTTTTCAA 328047 Query 213463 CGTCCTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAG 213522 |||| || || ||||| |||||| ||| |||||||| |||||| ||||| | Sbjct 328046 CGTCG---ACGAAGCGCGGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCG 327990 Query 213523 AGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCT 213582 |||||||| | || || ||||||||||| ||| ||| || || ||||||| Sbjct 327989 GCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCT 327930 Query 213583 GGTGGTTTGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTA 213642 ||||||||||| |||| | ||||||||| || ||| | || || ||||| | Sbjct 327929 TCTGGTTTGACTTGCTGTTGCATGCATCCTTGTACAGGATGAACGGCCCGCCCGTCTCGA 327870 Query 213643 GCTGGGACACCAGTATCTGGCT--CCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAG 213699 ||| ||| |||| || ||| ||| | | |||| |||| || | | ||||| Sbjct 327869 TCTGAGACTCCAGGAT--GGCAAACCACACCT-CCTGCGCCTGGATCGTCT---TGACAC 327816 Query 213700 CTCCGGGCGTA-GCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCC---CAGACC 213755 | | | | | |||||||| | ||||||||| | ||| | | ||| ||| | Sbjct 327815 CGC-GTCCTTCCGCCTCGTAGCGCTCGTAGAGCCGCTCGAACGCCTCGCCATGGCAGTCG 327757 Query 213756 CTGTCCAGTCCCGGACAGGA-TGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814 ||| || ||||| || | | ||| | ||| || |||| ||| ||| | |||| Sbjct 327756 CTG---AGGCCCGGGCACGTGTTAGGGTC-CATCAGCGTCCACCGCCCCTCACTTTTGAC 327701 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 | || |||||||| |||||||| ||||| |||| ||| ||||| | || | | || Sbjct 327700 ACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTC 327641 Query 213875 GTCCACTCCAGAGTTTTTGCGC---AGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGG 213931 ||| ||| | ||| |||| || || || |||||| || || ||||| || Sbjct 327640 ATCCTTTCCTGTGTT---GCGCTTCAGCAACAGGAAACCAAAGACATCGGCATGCCAGGG 327584 Query 213932 CTCCATGTAGATGGCAAAGGCGCCCGGCCTCTT---GCCGCCCTGGTCCACCAGCCTGGC 213988 ||| | |||| ||| ||||||||| | ||| |||||||||||| || | ||| Sbjct 327583 CTCGAGATAGACGGCGAAGGCGCCCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGC 327524 Query 213989 CACCATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGC 214048 ||||||||| |||||| | ||||| || ||||| ||| ||||||||||| || Sbjct 327523 AGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGC 327464 Query 214049 TATATACGAGCCGGAGGCCCTCAGGT--TGCTCATGGAGAGCCCTATGCCACCGGCGTAC 214106 || || ||||| ||| | | || ||| |||| ||| || || || ||||| | Sbjct 327463 AATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAGA--CCAATACCGCCGGCCGCC 327406 Query 214107 TTGGAGATCATGGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATC 214162 ||| ||||| |||||| | ||| || || ||||||| | |||||||| || Sbjct 327405 TTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTC 327350 >seq17 Length=659812 Score = 147 bits (162), Expect = 4e-30 Identities = 530/817 (65%), Gaps = 13/817 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | |||||||||||||| || || |||| || |||||| |||| Sbjct 494677 CTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTC 494736 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAG 47958 ||||||| ||||| | | | ||| || | | ||||| | | ||||| Sbjct 494737 CATGAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAG 494796 Query 47959 GTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGA 48018 | ||||||||| |||| ||||| | | ||| || | |||||||| || || Sbjct 494797 CCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCGGCATTCATGCCAATCAGCCG 494856 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || || | || | || ||||| || || | ||| || ||| | | |||| Sbjct 494857 CATCGGAAGCGCGTCGCAGATGAACTCGCGTTCGATGTTCACCGCATCCACAATGATCTC 494916 Query 48079 CTTAACGCGGGACTCT-GAGG--GTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGC 48135 | ||||| ||| | || |||||| | |||| | || |||| || || Sbjct 494917 CAGCACGCG---CTCGCGCGGCAGTTTGTGCTTGATGTGCGAGTTGTACAGCAGACACGC 494973 Query 48136 AAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGG 48195 |||||| |||| | ||| ||||| || ||||||| ||||| ||| | || || Sbjct 494974 GAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGG 495033 Query 48196 CATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCC 48255 ||| | || | || || |||||||| | || ||| || || || ||||||||||| Sbjct 495034 CATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCC 495093 Query 48256 CTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA 48315 ||||||||| || || || | |||| ||| | | ||| || || || | ||||| Sbjct 495094 CTCCACTGCGGCAAAGCCGATCAGCCGCTC-CTGGAAG-CTCGCGCTGCTCCCA-ATCCA 495150 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 | ||||| || |||||||||| ||||||||| ||||||| || || | | || Sbjct 495151 CCGCACGGCCCACTCCGCCTTCTTCTGGATGCATGGGATCGTCTGGATCGCGTGCAGCAG 495210 Query 48376 CTTCTTGCACTCACCT-GC-GTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCA 48433 | | || || ||| || ||| | | || || || ||| | ||| |||| Sbjct 495211 CCGC-AGC-TTCTCCTCGCTGTCTGTGATGTACGTGTCCAGTAGCACAGAGTATGTCTCT 495268 Query 48434 GAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGC 48493 ||||| | ||||| || | |||||| |||||||| || | ||||| ||||| | Sbjct 495269 GAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGCGCCTCCGGCACCTTC 495328 Query 48494 ACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAG 48553 || || | ||| | || |||||||| ||| || || || | || ||| Sbjct 495329 ACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCGTCGCTCCCGGCGAAG 495388 Query 48554 AAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGT 48613 |||||||| || || || | || || || || || | | || || |||| ||| Sbjct 495389 AAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 495448 Query 48614 ACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGA 48650 | ||| ||||||||||| | || || || ||||||| Sbjct 495449 ATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGA 495485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532369166080