Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq23 192 7e-43 seq17 156 5e-32 seq22 138 1e-26 seq27 93.3 5e-13 >seq23 Length=1180511 Score = 192 bits (212), Expect = 7e-43 Identities = 212/280 (76%), Gaps = 2/280 (1%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| |||||||| || |||| ||| |||||||| ||||| || ||||| ||||| Sbjct 327544 GCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTT 327485 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCG-GCAA 1630180 ||| ||||||||| || || | |||| |||||||||||| | |||||| | ||| Sbjct 327484 CGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAG 327425 Query 1630181 AGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGC 1630240 | || || |||||||||| |||| ||| | ||||||| || ||||| |||||||||| Sbjct 327424 A-CCAATACCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGC 327366 Query 1630241 CCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCG 1630300 | ||||| |||| ||||| |||| || |||||||| ||||||| | || | Sbjct 327365 CGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 327306 Query 1630301 TGCCGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAA 1630340 |||| ||||||||||| || || || || |||||| || Sbjct 327305 TGCCAGCGTTGAAGAGGGTTGGAGTAGCGTGGGTGAAAAA 327266 >seq17 Length=659812 Score = 156 bits (172), Expect = 5e-32 Identities = 212/296 (72%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || | |||||| ||||| || || | | |||| | ||| | Sbjct 495269 GAGTGGATGTTCTCCATCATCAGCTGGAATCCGTAGAACGCGCGCGCCTCCGGCACCTTC 495328 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || ||||||| || ||| || |||||| | |||||||||||||| ||||||| Sbjct 495329 ACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCGTCGCTCCCGGCGAAG 495388 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || || ||||||||||||||||| || || ||||| | |||| |||||||| Sbjct 495389 AAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGCGCCACCCAGTCCTTC 495448 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 ||||| || ||||| | |||||| | |||||||| || ||| || |||||| Sbjct 495449 ATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGATGCAGCTCTCCTGCTCCTTGTAC 495508 Query 869873 ATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTC 869928 | ||| | | ||||| |||| |||||||| || ||||| ||||| || Sbjct 495509 TTGCGCCAGATATCGTGGTACTGGATGGGGAAGAGAACGTAGCGGAACGGGTTCTC 495564 Score = 129 bits (142), Expect = 7e-24 Identities = 177/245 (72%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||||||||| | ||| || ||||| || ||||||| ||||||||| Sbjct 494672 GCCTTCTGGTACTCGCCCACCTTCTTCTCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 494731 Query 868751 AACTCCATCCACGGGAACGGGTTG-GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 | |||||| | | || ||| || | || ||||||||||| || || |||||| | Sbjct 494732 ATCTCCAT-GAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCCCAGCGACAC 494790 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| ||||| ||||| ||||| |||||||| ||| || |||| |||||||| || Sbjct 494791 AAGCAGCCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCGGCATTCATGCCAAT 494850 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| || ||| |||| |||| | ||||| ||||| | || || || || || Sbjct 494851 CAGCCGCATCGGAAGCGCGTCGCAGATGAACTCGCGTTCGATGTTCACCGCATCCACAAT 494910 Query 868930 GATCT 868934 ||||| Sbjct 494911 GATCT 494915 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||||| || | | || ||||| || ||||||||| Sbjct 494990 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGGCATCAGACCGCGCTTC 495049 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || || || ||||||||||| || ||||||||| Sbjct 495050 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCTCCACTGCGGCAAAG 495109 Query 869300 CCGATGAGCCGCTC 869313 ||||| |||||||| Sbjct 495110 CCGATCAGCCGCTC 495123 >seq22 Length=1192232 Score = 138 bits (152), Expect = 1e-26 Identities = 179/245 (73%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||||||||| || ||| || ||||| || ||||||| ||||||||| Sbjct 920295 GCCTTCTGGTACTCGCCCACCTTCCTCTCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATC 920354 Query 868751 AACTCCATCCACGGGAACGGGTTG-GGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 | |||||| | | || ||| || | || ||||||||||| || || |||||| | Sbjct 920355 ATCTCCAT-GAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCCCAGCGACAC 920413 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| ||||| ||||| ||||| |||||||| ||| || |||| |||||||| || Sbjct 920414 AAGCAGCCGGTCCGCGACGAACTCAATGTACTGCGCCATCAGCTCGGCATTCATGCCAAT 920473 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 ||| |||||| |||| |||| | ||||| ||||| | || || || || || Sbjct 920474 CAGCCGCACCGGAAGCGCGTCGCAGATGAACTCGCGTTCGATGTTCACCGCATCCACAAT 920533 Query 868930 GATCT 868934 ||||| Sbjct 920534 GATCT 920538 Score = 102 bits (112), Expect = 1e-15 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||||| || | | || ||||| || ||||||||| Sbjct 920613 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGGCATCAGACCGCGCTTC 920672 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || | |||||||| || || || ||||||||||| || ||||||||| Sbjct 920673 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCTCCACTGCGGCAAAG 920732 Query 869300 CCGATGAGCCGCTC 869313 ||||| |||||||| Sbjct 920733 CCGATCAGCCGCTC 920746 >seq27 Length=1625307 Score = 93.3 bits (102), Expect = 5e-13 Identities = 84/106 (79%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 732350 CGAGGTGCACCCGCTGCTCATGCTCGGGGCCTGCGCGTCCATCATCCCGTTCTCCAACCA 732409 |||| || ||||| | | || || || ||||| ||||| ||||| | | ||||||| Sbjct 73548 CGAGATGGACCCGTCGATGATTCTTGGCATTTGCGCCTCCATTATCCCCTACCCCAACCA 73489 Query 732410 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAG 732455 ||||||| |||||||||||| ||||||| | |||||||| |||||| Sbjct 73488 CAACCAGTCGCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAG 73443 Score = 86.0 bits (94), Expect = 8e-11 Identities = 138/194 (71%), Gaps = 7/194 (4%) Strand=Plus/Minus Query 733092 GGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGGGCAGCGTGCGCTCCACC 733151 ||||||||| | | || |||||||||||||||||| |||| | | | | || Sbjct 72845 GGCGACAAATTTTGCAGCCGGCACGGCCAAAAGGGCACCAACGGCAT--TCAGTTTCGCC 72788 Query 733152 --GAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGACATCGTGATCAACCCGC 733209 ||||||||||||| || |||| ||||| | ||| ||| || | |||||||||| Sbjct 72787 AGGAGGACATGCCCT--TCAAT-CGCGACGGCGTCGTGCCGGACCTCATCATCAACCCGC 72731 Query 733210 ACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGCCCTCCTGGGCAAGGTGG 733269 ||||||| || || |||||||| ||| | | || |||| | || |||||||||| Sbjct 72730 ACGCCATTCCCTCCCGCATGACAGTGGCCCACCTGATCGAAACACTGGCCGGCAAGGTGG 72671 Query 733270 CCTGCCGCGAGGGC 733283 | ||| | ||||| Sbjct 72670 CGTGCTACAAGGGC 72657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107136163606729