Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23 170 3e-36 seq17 147 3e-29 seq22 145 1e-28 seq27 102 1e-15 >seq23 Length=1180511 Score = 170 bits (188), Expect = 3e-36 Identities = 200/268 (75%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || |||||| || ||||| || |||| ||| |||||||| ||||| || || || ||||| Sbjct 327544 GCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGGTACGAGTCCGTT 327485 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCG-GCAA 2073655 ||| ||||||||| || || | |||| ||| | |||||| | |||||| | ||| Sbjct 327484 CGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTTGTGCACATGCAG 327425 Query 2073656 AGCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGC 2073715 | || || ||||||||||||||| ||| | ||||||| |||||||| |||||||||| Sbjct 327424 A-CCAATACCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTCAGCGTATCGTAGATGC 327366 Query 2073716 CCTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCG 2073775 | ||||| |||| ||||| ||| ||| |||||||| ||||||| || | Sbjct 327365 CGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGG 327306 Query 2073776 TGCCGGCATTGAAGAGCGTGGGCGTCGC 2073803 |||| || |||||||| || || || || Sbjct 327305 TGCCAGCGTTGAAGAGGGTTGGAGTAGC 327278 >seq17 Length=659812 Score = 147 bits (162), Expect = 3e-29 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| || || | || || ||||||| || ||| || ||||| | ||||||||| Sbjct 495314 GCCTCCGGCACCTTCACGTCGCTCATGAAACGCTGGGCAAGATTCTCGACGACGATGCCG 495373 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 ||||| ||||||| ||||| || ||||||||||||||||| || || ||||| | ||| Sbjct 495374 TCGCTCCCGGCGAAGAAGGCAAGCACGTGCTTGATAAAGTGCCGTTCCCCGTCGTTCAGC 495433 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 | ||||||| | ||||| ||| ||||||| |||||| | ||||| | | || | Sbjct 495434 GCCACCCAGTCCTTCATGTCGTTGCCCAGGTCGATCTCCTCTACCGTCCAGATGCAGCTC 495493 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAGCGA 796389 || || |||||| | ||| || ||||| |||||||||| ||||| |||| Sbjct 495494 TCCTGCTCCTTGTACTTGCGCCAGATATCGTGGTACTGGATGGGGAAGAGAACGTAGCGG 495553 Query 796390 TTGGGGTTCTCGCGTAGCAGCGGCTC 796415 |||||||| | |||||||||| Sbjct 495554 AACGGGTTCTCCTGCTGCAGCGGCTC 495579 Score = 136 bits (150), Expect = 6e-26 Identities = 197/275 (72%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||||| ||||| ||| | ||||| ||||| ||||||||||| | ||| Sbjct 494645 GACGTCCCCTCCGCGCTCA---TCACGCCGGCCTTCTGGTACTCGCCCACCTTCTTCTCA 494701 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTG-GCCGT 793987 || ||||| || ||||||| |||||||||| |||||| | | || ||| || | || Sbjct 494702 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAA-GTCAAAGGGCTGAGTCGC 494760 Query 793988 CAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTA 794047 |||||||||||| || |||||| ||||||| ||||| |||||||| |||||||| Sbjct 494761 GTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTA 494820 Query 794048 CTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAA 794107 ||| ||| || |||| |||||||| || ||| || || |||| |||| || || Sbjct 494821 CTGCGCCATCAGCTCGGCATTCATGCCAATCAGCCGCATCGGAAGCGCGTCGCAGATGAA 494880 Query 794108 CTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| ||||| | || || || | ||||||| Sbjct 494881 CTCGCGTTCGATGTTCACCGCATCCACAATGATCT 494915 Score = 102 bits (112), Expect = 1e-15 Identities = 216/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||||| || | || ||||| || ||||||||| Sbjct 494990 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGGCATCAGACCGCGCTTC 495049 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| || || || ||||||||||| || ||||||||| Sbjct 495050 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCTCCACTGCGGCAAAG 495109 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCAC 794520 |||| |||||||| || | | || | | |||||| || |||||| Sbjct 495110 CCGATCAGCCGCTCCTGGAAGCTCGCGCTGCTCCC------AATCCACCGCACGGCCCAC 495163 Query 794521 TCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCG 794580 || ||||| ||| | | || | ||| | ||| ||| | | || | |||||| Sbjct 495164 TCCGCCTTCTTCTGGATGCATGGGATCGTCTGGATCGCGTGCAGCAGCCGCAGCTTCTCC 495223 Query 794581 ACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCG 794640 | ||| ||| ||| ||||| | || | ||||| ||||||||||||||||| || Sbjct 495224 TCGCTGTCTGTGATGTACGTGTCCAGTAGCACAGAGTATGTCTCTGAGTGGATGTTCTCC 495283 Query 794641 ATGGCGATCTGGAAGCCATAAAA 794663 || | |||||| || || || Sbjct 495284 ATCATCAGCTGGAATCCGTAGAA 495306 >seq22 Length=1192232 Score = 145 bits (160), Expect = 1e-28 Identities = 199/275 (72%), Gaps = 5/275 (2%) Strand=Plus/Plus Query 793869 GACGTCCTCTCCGTCCTCGATGTGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCG 793928 ||||||| ||||| ||| | ||||| ||||| ||||||||||| || ||| Sbjct 920268 GACGTCCCCTCCGCGCTCA---TCACGCCGGCCTTCTGGTACTCGCCCACCTTCCTCTCA 920324 Query 793929 AAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATCCACGGGAACGGGTTG-GCCGT 793987 || ||||| || ||||||| |||||||||| |||||| | | || ||| || | || Sbjct 920325 AAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTCCATGAA-GTCAAAGGGCTGAGTCGC 920383 Query 793988 CAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTA 794047 |||||||||||| || |||||| ||||||| ||||| |||||||| |||||||| Sbjct 920384 GTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAGCCGGTCCGCGACGAACTCAATGTA 920443 Query 794048 CTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAA 794107 ||| ||| || |||| |||||||| || ||| ||| || |||| |||| || || Sbjct 920444 CTGCGCCATCAGCTCGGCATTCATGCCAATCAGCCGCACCGGAAGCGCGTCGCAGATGAA 920503 Query 794108 CTCTTTCTCGATCTCGACGGCCTCGATGATGATCT 794142 ||| ||||| | || || || | ||||||| Sbjct 920504 CTCGCGTTCGATGTTCACCGCATCCACAATGATCT 920538 Score = 89.7 bits (98), Expect = 8e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 || |||||||| ||| | |||||||| || | || ||||| || ||||||||| Sbjct 920613 CCCTCGTCGCGCGAGATGAGCTCGTTGCTGAACGTCAACCCCGGCATCAGACCGCGCTTC 920672 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| || | || ||||| || || || ||||||||||| || ||||||||| Sbjct 920673 TTCAGCCAGAACAGCGCGCAGAAGGATCCGGAAAAGAAGATGCCCTCCACTGCGGCAAAG 920732 Query 794461 CCGACGAGCCGCTC 794474 |||| |||||||| Sbjct 920733 CCGATCAGCCGCTC 920746 >seq27 Length=1625307 Score = 102 bits (112), Expect = 1e-15 Identities = 208/298 (70%), Gaps = 17/298 (6%) Strand=Plus/Minus Query 652894 CGAGGTGCACCCGCTGCTCATGCTGGGCGCCTGCGCTTCCATCATCCCCTTTTCCAACCA 652953 |||| || ||||| | | || || ||| ||||| ||||| ||||||| ||||||| Sbjct 73548 CGAGATGGACCCGTCGATGATTCTTGGCATTTGCGCCTCCATTATCCCCTACCCCAACCA 73489 Query 652954 CAACCAGGCGCCGCGCAACATCTACCAGACGGCCATGGGCAAGCAGAGCAAGGCCGTCGT 653013 ||||||| |||||||||||| ||||||| | |||||||| |||||| || || | || | Sbjct 73488 CAACCAGTCGCCGCGCAACACCTACCAGTCCGCCATGGGTAAGCAGGCCATGGGCATC-T 73430 Query 653014 GTCGCTC-AACGCCGATCACGC-CATCGACACCGTGTCGCACGCCCTCTGCTACCCGCAG 653071 ||| ||| | | || || ||| || ||| | || | ||||| |||||| || Sbjct 73429 ACGCCTCGAACTTC-AACATGCGCATGGATACCACCGCCCATGTCCTCTTCTACCCACAA 73371 Query 653072 GTGCCGCTGGTGCAGAC---GGCCATGGAGGACGT-CAT-CGGCGCCACGCGCCTCCCGA 653126 |||||||||| || |||||| ||||| ||| | || ||| ||| || Sbjct 73370 AAACCGCTGGTGCGCACCAAGGCCAT----GACGTACATGCACAGCAACG-ACCTGCCCG 73316 Query 653127 TGGGCCAGAATGCGCGCGTGGCCATCATGAGCGACCCC---TACAACCAGGAGGACTC 653181 ||||| || ||| ||||||||| | || || | |||||||| |||||||| Sbjct 73315 CCGGCCACAACGCGGTGGTGGCCATCTCGTGCTACAGCGGGTACAACCAAGAGGACTC 73258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916242464141243