Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq23 246 3e-60 seq17 120 3e-22 seq22 118 1e-21 seq31 82.4 7e-11 >seq23 Length=1180511 Score = 246 bits (272), Expect = 3e-60 Identities = 590/872 (68%), Gaps = 33/872 (4%) Strand=Plus/Minus Query 147460 GCGATAGACGCCAGATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTC 147518 ||||| || || || ||||| ||||||||||| || |||| || |||||| || ||||| Sbjct 328026 GCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACG-TGTACTCGACAATTTC 327968 Query 147519 GGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTT-TGCTGATTGCTTTTCCGATTGC 147577 | ||||||||| ||| || || |||||| || | ||| || || | |||| Sbjct 327967 AGTGCACAGGTTCGAGCACTTGATCG-TCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGC 327909 Query 147578 ACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AA 147634 | || || ||| | || ||| |||| ||||| ||||||| || | || | ||| || Sbjct 327908 ATGCATCCTTGTACAGGATGAACGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAA 327849 Query 147635 ACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCT 147694 ||| || |||||||| | | | || | ||| || || ||||| |||| Sbjct 327848 ACCA---CACCTCCTGCGCCTGGATCGTCTTGACACCGCGTCCTTCCGCCTCGTAGCGCT 327792 Query 147695 CGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACAC-TGATGCGGA 147753 |||| | |||||| ||| | ||||| | ||| ||| ||||| || ||| || | || Sbjct 327791 CGTAGAGCCGCTCGAACGCCTCGCCATGGCAGTCGCTGAGGCCCGGGCACGTGTTAGGGT 327732 Query 147754 CACATCAGCGACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCAC 147813 | |||||||| |||| | || || || || ||| |||| ||||| | |||| Sbjct 327731 C-CATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGATCCAC 327673 Query 147814 AGCGCGTACATAAGATC----GCGCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAA 147869 | |||||| | || || ||||||| || |||| || ||||||| |||| Sbjct 327672 AACGCGTAGAAGAGGTCACGGGCGCGCTGGTCA-TCCTTT---CCTGTGTTGCGCTTCAG 327617 Query 147870 ATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTT 147929 || | | | ||| ||||| |||||||| || | |||||||| | || || || Sbjct 327616 CAACAGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGCCCTT 327557 Query 147930 ACGCTTTCCGCC---CTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGG 147986 ||||| ||||| |||||| || | ||| | ||||||| || ||||||| ||| || Sbjct 327556 GCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCATTGG 327497 Query 147987 TTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTC 148046 | | || ||| ||| ||||||||||| | || | ||||||| ||| || | | Sbjct 327496 TACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAATGTAGCTGCCGGCGGCGCGGATGTT 327437 Query 148047 GTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGAT-ATGGCAGCGCAATCGCCCAAT 148104 |||||| | | ||||| ||||| |||| | ||| | || | ||||| || || Sbjct 327436 GTGCACATGCAGACCAATACCGCCGGCCG--CCTTGCTGATCACGGCGCACTCCTTCAGC 327379 Query 148105 GTCGTGTAGATGCCGTCGATGCTGTCGT-TTTTGACGCCAAGCAAAAAACACGAACACAT 148163 || ||||||||||||||||||||||| || |||||| | || || ||||| | ||| Sbjct 327378 GTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCC-ACCAGGAAGCACGAGCTCAT 327320 Query 148164 TTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAA--TTTT 148221 |||||| || | || || || ||| ||||| ||| | ||||| || || || | Sbjct 327319 TTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTAGCGTGGGTGAAAAAGCCCAT 327260 Query 148222 TGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGC 148281 || ||||| ||||||||| ||| | || || |||||| ||||| || Sbjct 327259 CGA--CATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGATGCCAAGG 327202 Query 148282 GCGACGCGCATGAGCATGTGCTGTGGTCGTTC 148313 ||||| ||||| | ||| ||||| || || || Sbjct 327201 GCGACACGCATAAACATCTGCTGAGGCCGCTC 327170 >seq17 Length=659812 Score = 120 bits (132), Expect = 3e-22 Identities = 240/346 (69%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| |||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 495036 ATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 494977 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA-TTAAACTCGGACACGATCCT 47032 || |||||||| ||||| ||| | | || | ||| | | || | || | || Sbjct 494976 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCG-TGCT 494918 Query 47033 GAGCATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCC 47090 | || || ||| ||||||| ||||||| ||||| | ||||| ||||| || Sbjct 494917 GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCAT--CTGCGACGCGCTTCCG 494860 Query 47091 GT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTGGCGG 47148 | || | || | |||||||| || || ||| ||| | || |||||||| || |||| Sbjct 494859 ATGCGGC-TGATTGGCATGAATGCCGAGCTGATG-GCGCAGTACATTGAGTTCGTCGCGG 494802 Query 47149 ATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTTGAGT 47208 | || ||| | ||| ||| || | ||| | | || || | | || ||||| | Sbjct 494801 ACCGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTTGACT 494742 Query 47209 TTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAA 47254 | ||| | | || ||||| |||||||||| || || || ||||| Sbjct 494741 TCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAA 494696 >seq22 Length=1192232 Score = 118 bits (130), Expect = 1e-21 Identities = 240/349 (69%), Gaps = 18/349 (5%) Strand=Plus/Minus Query 46914 ATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGAC 46973 |||||||| |||||||||| |||||| | |||||||||||||| || |||||||||||| Sbjct 920659 ATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACACGGAC 920600 Query 46974 TTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAATTAAACTCGGACACGATCCTG 47033 || |||||||| ||||| ||| | | || | ||||| | ||| | || Sbjct 920599 TTCGCGTGTCTGCTGTACAACTCGCACATCAAGCA-----CAAACTGCCGCGCGAGCGTG 920545 Query 47034 AGC-----ATGTTTAGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCT 47086 || || || ||| ||||||| ||||||| ||||| | ||||| ||||| Sbjct 920544 TGCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCAT--CTGCGACGCGCT 920487 Query 47087 GCCCGT-CGCCTTGCTGGGCATGAACGCACAGTCTATGTGCG-AATATATTGAGTTTGTG 47144 || || || | || | |||||||| || || ||| ||| | || |||||||| || Sbjct 920486 TCCGGTGCGGC-TGATTGGCATGAATGCCGAGCTGATG-GCGCAGTACATTGAGTTCGTC 920429 Query 47145 GCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAATGCTCGTAATCCGTTT 47204 ||||| || ||| | ||| ||| || | ||| | | || || | | || ||| Sbjct 920428 GCGGACCGGCTGCTTGTGTCGCTGGGCGAGGAGAAGCACTACAACGCGACTCAGCCCTTT 920369 Query 47205 GAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGA 47253 || || ||| | | || ||||| |||||||||| || || || |||| Sbjct 920368 GACTTCATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGA 920320 >seq31 Length=2746506 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| |||| || | | ||||| || || ||||||||||| | || Sbjct 1398737 ACGCAGGCGCAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCCGAGAGCGT 1398796 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| | |||| || ||||| || || || || ||||| Sbjct 1398797 GCGGCCCTCCTCCAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCCGGCGGGATGCC 1398856 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | || ||| |||||||||| |||| Sbjct 1398857 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTCGGCTCCACCTCGAG 1398916 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||| || || ||||| || || | ||| ||||||||| Sbjct 1398917 CGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTGCATG 1398959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476610979567320