Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17 230 3e-54 seq23 165 1e-34 seq22 131 2e-24 seq27 89.7 7e-12 >seq17 Length=659812 Score = 230 bits (254), Expect = 3e-54 Identities = 412/595 (69%), Gaps = 9/595 (2%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| || || |||||||||| ||||| Sbjct 495579 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCCATCCAGTACCACGAT 495520 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 495519 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGACCT 495461 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||||| |||||| ||||| || || || || |||||||| Sbjct 495460 GGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGGCACTTTATCAAGCA 495401 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || ||||| || ||||| ||||| |||||||| | |||||| || ||| || | Sbjct 495400 CGTGCTTGCCTTCTT-CGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGTT 495342 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||| ||||| || ||| ||||| |||||| | || | Sbjct 495341 TCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCCAGCTGATGATGG 495282 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | || | ||||| ||| ||| ||| | | Sbjct 495281 AGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGCGAGG 495222 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| ||| | ||| | || | | ||| ||||| || | Sbjct 495221 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGGAGT 495162 Query 1456136 GGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTT 1456195 |||| || |||||| |||| | ||| ||| |||||||| ||||||| Sbjct 495161 GGGCCGTGCGGTGGAT----TGGGAGCAGCGCGA-GCTTCCAGGAGCGGCTGATCGGCTT 495107 Query 1456196 TGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAA 1456254 |||||| || ||||||||||| || || || |||||||| | || ||||| ||||| Sbjct 495106 TGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCGCTGTTCTGGCTGAAGAA 495047 Query 1456255 GCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||| || ||| |||| || || |||||||| | ||| |||||||| Sbjct 495046 GCGCGGTCTGATG-CCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGA 494993 Score = 120 bits (132), Expect = 4e-21 Identities = 225/321 (70%), Gaps = 15/321 (5%) Strand=Plus/Minus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCGA---CGTG 1456513 ||||| || |||||||| |||| || | |||| ||| | | || ||| |||| Sbjct 494979 GACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGTG 494920 Query 1456514 CCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTG 1456573 | | ||||||| || || || || | ||||| ||||| || |||| |||| Sbjct 494919 CT---GGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGCGACGCGCTT 494863 Query 1456574 CCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCG 1456633 ||| || ||| || |||||||| ||| ||| ||| ||||||||||| || |||| Sbjct 494862 CCGATGCGGCTGATTGGCATGAATGCCGA-GCTGATGGCGCAGTACATTGAGTTC-GTCG 494805 Query 1456634 CCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-CAACCCGTT 1456692 | ||||| ||||| | | |||| ||| | ||||||||||||| || | || ||| || Sbjct 494804 CGGACCGGCTGCTTGTGTCGCTGGGC-GAGGAGAAGCACTACAACGCGACTCAGCCCTTT 494746 Query 1456693 CCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGG- 1456751 | | |||||| |||||||||| ||||||| || ||||| || ||| |||| Sbjct 494745 GACTTC-ATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAAGAAGGTGGG 494687 Query 1456752 CGAGTACGCCAAGGCCGGCGT 1456772 ||||||| ||||||||||| Sbjct 494686 CGAGTACCAGAAGGCCGGCGT 494666 >seq23 Length=1180511 Score = 165 bits (182), Expect = 1e-34 Identities = 206/280 (74%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 259907 TTGTTCACCTCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCG 259966 || |||||| || || || || ||||| || || ||||| ||| ||||| ||| | Sbjct 327266 TTTTTCACCCACGCTACTCCAACCCTCTTCAACGCTGGCACCCCGAAGCCGCA-AATGAG 327324 Query 259967 -TCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAA 260025 |||||||| ||| ||| ||||| ||| ||||| |||||||| || ||||| || Sbjct 327325 CTCGTGCTTCCTGGTGGCGTCGAAGGACGACAGCATCGACGGCATCTACGATACGCTGAA 327384 Query 260026 GCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCG 260085 | ||||||| | ||| ||||||||||||||| || ||| | | ||||| | || Sbjct 327385 GGAGTGCGCCGTGATCAGCAAGGCGGCCGGCGGTATTGGTCTGCATGTGCACAACATCCG 327444 Query 260086 CGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCT 260145 |||||| ||| |||| | || || ||||||||| ||| ||||| || || || ||||| Sbjct 327445 CGCCGCCGGCAGCTACATTGCTGGAACCAACGGCACGTCGAACGGACTCGTACCAATGCT 327504 Query 260146 TCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAGTGC 260185 ||||| || ||| |||| || |||||||| |||||| || Sbjct 327505 GCGCGTCTTCAACAACACTGCCCGCTACGTAGACCAGGGC 327544 >seq22 Length=1192232 Score = 131 bits (144), Expect = 2e-24 Identities = 227/319 (71%), Gaps = 11/319 (3%) Strand=Plus/Minus Query 1456460 GACTTTGCCTGTCTGCTCTACACGATGCTCGTCAA---CAAGCCGTCGACCGA-CGTGCC 1456515 ||||| || |||||||| |||| || | |||| ||| | | || ||| |||| Sbjct 920602 GACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGTGTG 920543 Query 1456516 CAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCC 1456575 | | ||||||| || || || || | ||||| ||||| || |||| |||| || Sbjct 920542 CTGG-AGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGCGACGCGCTTCC 920484 Query 1456576 GGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCC 1456635 |||| ||| || |||||||| ||| ||| ||| ||||||||||| || ||||| Sbjct 920483 GGTGCGGCTGATTGGCATGAATGCCGA-GCTGATGGCGCAGTACATTGAGTTC-GTCGCG 920426 Query 1456636 GACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-CAACCCGTTCC 1456694 ||||| ||||| | | |||| ||| | ||||||||||||| || | || ||| || Sbjct 920425 GACCGGCTGCTTGTGTCGCTGGGC-GAGGAGAAGCACTACAACGCGACTCAGCCCTTTGA 920367 Query 1456695 CATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGTGG-CG 1456753 | | |||||| |||||||||| ||||||| || ||||| || ||| | |||| || Sbjct 920366 CTTC-ATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAGGAAGGTGGGCG 920308 Query 1456754 AGTACGCCAAGGCCGGCGT 1456772 ||||| ||||||||||| Sbjct 920307 AGTACCAGAAGGCCGGCGT 920289 Score = 87.8 bits (96), Expect = 3e-11 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 1456179 GAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCC 1456237 |||||||| ||||||||||||| || ||||||||||| || || || |||||||| Sbjct 920746 GAGCGGCTGATCGGCTTTGCCGCAGTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCGCG 920687 Query 1456238 ATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTAT 1456297 | || ||||| ||||||||||| || ||| |||| || || |||||||| | || Sbjct 920686 CTGTTCTGGCTGAAGAAGCGCGGTCTGATG-CCGGGGTTGACGTTCAGCAACGAGCTCAT 920628 Query 1456298 CAGTCGCGACGA 1456309 | |||||||| Sbjct 920627 CTCGCGCGACGA 920616 >seq27 Length=1625307 Score = 89.7 bits (98), Expect = 7e-12 Identities = 205/298 (69%), Gaps = 17/298 (6%) Strand=Plus/Plus Query 1601177 GAGTCCTCCTGGTTGTA---GGGGTCGCTCATGATGGCCACGCGCGCATTCTGGCCCATC 1601233 |||||||| |||||||| | || || | ||||||||| ||| || ||||| Sbjct 73258 GAGTCCTCTTGGTTGTACCCGCTGTAGCACGAGATGGCCACCACCGCGTTGTGGCCGGCG 73317 Query 1601234 GGGAGGCGCGTGGCGCCG-ATG-ACGTCCTCCATGGC---GGTCTGCACCAGCGGCACCT 1601288 || ||| ||| || | ||| ||||| ||||| ||| |||||||||| | Sbjct 73318 GGCAGGT-CGTTGCTGTGCATGTACGTC----ATGGCCTTGGTGCGCACCAGCGGTTTTT 73372 Query 1601289 GCGGGTAGCACAGGGCGTGCGACACCGTGTCGATG-GCATGGTCGGCGTT-GAGCGACAC 1601346 | |||||| | ||| | || | || || ||| ||||| | | ||| ||| | Sbjct 73373 GTGGGTAGAAGAGGACATGGGCGGTGGTATCCATGCGCATGTT-GAAGTTCGAGGCGTA- 73430 Query 1601347 GACGGCCTTGCTCTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTG 1601406 || | || || |||||| |||||||| | ||||||| |||||||||||| ||||||||| Sbjct 73431 GATGCCCATGGCCTGCTTACCCATGGCGGACTGGTAGGTGTTGCGCGGCGACTGGTTGTG 73490 Query 1601407 GTTGGAAAACGGGATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCG 1601464 ||||| | ||||| ||||| ||||| ||| || || | | ||||| | |||| Sbjct 73491 GTTGGGGTAGGGGATAATGGAGGCGCAAATGCCAAGAATCATCGACGGGTCCATCTCG 73548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807631281994