Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq23 138 1e-27 seq19 82.4 1e-10 seq9 82.4 1e-10 >seq23 Length=1180511 Score = 138 bits (152), Expect = 1e-27 Identities = 557/866 (64%), Gaps = 21/866 (2%) Strand=Plus/Minus Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || || ||||| || || | ||||| || |||||||| ||| |||||||| | | Sbjct 328032 GGCAGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACA 327973 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| || || | ||| || | ||| |||||||| | ||||| ||||| ||| || Sbjct 327972 ATTTCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTG 327913 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| ||||||||||| || ||| | ||| |||||||| |||| || | || || Sbjct 327912 TTGCATGCATCCTTGTACAGGATGAACGGCCCGCCCGTCTCGATCTGAGACTCCAGGATG 327853 Query 111410 GCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG---GCCCGTCCCTCCGCCTCGTA 111465 || ||| || | | ||| |||| || | ||| | ||||| ||||||||||| Sbjct 327852 GCAAACCACACCTCCTGCGCCTGG----ATCGTCTTGACACCGCGTCCTTCCGCCTCGTA 327797 Query 111466 CTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGC-GTCGGAGAGACCTGGTGCCTTGT 111524 |||||| || ||| |||| ||| || |||| ||| || || | ||| Sbjct 327796 GCGCTCGTAGAGCCGCTCGAACGCCTC-GCCATGGCAGTCGCTGAGGCCCGGGCACGTGT 327738 Query 111525 CTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAA 111584 || | || | ||| | || | | || ||||||||||| | ||| || | Sbjct 327737 TAGGGTCCATCAGCGTCCACCGCCCCTCACTTTTGACACGCTTCATGAACAAGTCCGGGA 327678 Query 111585 TCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAG--TC- 111641 |||||| | | ||||| || | || || || | ||| |||| | || Sbjct 327677 TCCACAACGCGTAGAAGAGGTCACGGGCGCGCTGGTCATCCTTTCCTGTGTTGCGCTTCA 327618 Query 111642 GTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | ||| ||||| | | || ||| || ||||| ||||| |||||||| |||| | | Sbjct 327617 GCAAC---AGGAAACCAAAGACATCGGCATGCCAGGGCTCGAGATAGACGGCGAAGGCGC 327561 Query 111702 CCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || || || | || | ||| ||||| || ||| ||| || ||||| |||| Sbjct 327560 CCTTGCGCTTACCGCCGCCCTGGTCTACGTAGCGGGCAGTGTTGTTGAAGACGCGCAGCA 327501 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGAT-TTATTGGCTCTC 111817 |||| | | || | || || || || || ||| || | ||| | Sbjct 327500 TTGGTACGAGTCCGTTCGACGTGCCGTTGGTTCCAGCAAT-GTAGCTGCCGGCGGCGCGG 327442 Query 111818 ACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTA 111877 | | || | |||| |||||||| || ||| ||| ||| || |||||| | Sbjct 327441 ATGTTGTGCACATGCAGACCAATACCGCCGGCCGCCTTGCTGATCACGGCGCACTCCTTC 327382 Query 111878 AGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGAC 111937 || || | ||||| |||| ||| ||| ||||| || | |||||||| | | Sbjct 327381 AGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTC 327322 Query 111938 ATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT 111997 || ||||| | || || ||||| |||||||||||||| || ||||| |||| | || Sbjct 327321 ATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTAGCGTGGGTGAAAAAGCCC 327262 Query 111998 TGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATT 112057 |||||| | ||| ||||| || | | ||| ||||||||||| | Sbjct 327261 ATCGACATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGATGCCAAGG 327202 Query 112058 GCGACCCGCATGAACATGTACTGTGG 112083 ||||| ||||| ||||| | ||| || Sbjct 327201 GCGACACGCATAAACATCTGCTGAGG 327176 >seq19 Length=848869 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 616004 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 616063 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 616064 CAGGTAGGAG 616073 >seq9 Length=705808 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 145282 GCTCTTATAGTGTAGTGGTCATCACTTTGGACTTTGAATCCAACAACCCTGGTTCAAATC 145341 |||| |||||||||| ||| ||||| | ||||| ||||||| | ||||||||||| | || Sbjct 452979 GCTCCTATAGTGTAGCGGTTATCACCTCGGACTCTGAATCCGATAACCCTGGTTCGAGTC 452920 Query 145342 CAGGTAGGAG 145351 |||||||||| Sbjct 452919 CAGGTAGGAG 452910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031709535200