Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq34 129 5e-25 seq27 93.3 3e-14 >seq34 Length=527293 Score = 129 bits (142), Expect = 5e-25 Identities = 376/573 (66%), Gaps = 16/573 (3%) Strand=Plus/Minus Query 29895 GGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGT 29954 ||||||| || ||||| || || |||| || | || || || || || ||| | | Sbjct 366332 GGTAGACATGGGCGTCGCCGAGCGTGTGCACGAGTTCGCCAGGCCGCAGACCCGTGGCTT 366273 Query 29955 GAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCA 30014 ||||| | | ||||| || | |||| ||||||||| ||||| || |||||||||| Sbjct 366272 TTGCCATAAGGATGGTGAGCAGCGCGTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCA 366213 Query 30015 TGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC--TC-CGTC---GCTCACGTAAA 30068 |||| | ||| | |||||| ||| || || ||||| || |||| | ||||||| | Sbjct 366212 TGTCGCACGAGCGCTGGTACAGCATGCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGA 366153 Query 30069 ACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGG 30128 ||||| | ||| || || || | ||||| | || | |||||||||| Sbjct 366152 ACTGAGCAAGCAAGTGACAGGGCGGCAACGCCATCTCGTGCAGCGCGCATGGGTTCCAGG 366093 Query 30129 CGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCA 30188 | | | || ||| | ||| | |||||| | ||||| |||||| | || | Sbjct 366092 CAGTTAACAGGAGGCGGCGGTCGTTTGGGTTCACCTTGATGGTCTCCACGATGGATTTGA 366033 Query 30189 GCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAAT 30248 ||| |||||||| || ||| | ||| | || |||||| ||||||||| | Sbjct 366032 TCTGGTCCACCCCTTCGCCATCGTAATTCGCCTCAAACCCCTTGTACTGTGCTCCGAAGT 365973 Query 30249 GCCTCCACTGGAACCCGTACACCGGTCCCAG----GTCTCCCTCTTCCCTGTGCTCGAAG 30304 | | ||||||||| ||||| || || || || ||||| | ||| | || ||| Sbjct 365972 GGCGCCACTGGAATCCGTAGACAGGGCCGAGATCCATCTCCTTATTCGCCGT----CAAG 365917 Query 30305 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCA 30364 || | |||| | ||| || | || ||||| | |||||||| | | |||| || Sbjct 365916 CCGCGGCTGTCGAGAAACTCGCGCGAGCCGTTACCATCCCAGATGTGAATGTCCTTGTCC 365857 Query 30365 GAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTC-CACGACGGC 30423 | ||| | || |||||| || | | |||||||||||||||||| ||| ||| | Sbjct 365856 GCCAGCAACTGGGCGTTTGTTTCGCCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCC 365798 Query 30424 CTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 ||| || || | ||| || || | ||| || Sbjct 365797 GCGCCAGAAAACACGCTTCGTTGTCAAGAGCGG 365765 >seq27 Length=1625307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 52826 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 52885 ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||| || Sbjct 72789 CCAGGAGGACATGCCCTTCAATCGCGACGGCGTCGTGCCGGACCTCATCATCAACCCGCA 72730 Query 52886 CGCCTTTCCCTCCAGGATGACCGT 52909 |||| |||||||| | ||||| || Sbjct 72729 CGCCATTCCCTCCCGCATGACAGT 72706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310216779404