Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403675.1_202015-09-17] 37 sequences; 32,907,781 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq34 123 2e-23 seq27 93.3 3e-14 >seq34 Length=527293 Score = 123 bits (136), Expect = 2e-23 Identities = 398/609 (65%), Gaps = 18/609 (3%) Strand=Plus/Minus Query 27126 CTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGT 27185 ||||||||| ||||| | || | ||| | ||||||| || ||||| || || || Sbjct 366367 CTCGAGCTGCACTTTCAGAGCATCGATGTGGTTGCGGTAGACATGGGCGTCGCCGAGCGT 366308 Query 27186 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 27245 ||| || | || || || || || ||| | | ||||| | | ||||| || | Sbjct 366307 GTGCACGAGTTCGCCAGGCCGCAGACCCGTGGCTTTTGCCATAAGGATGGTGAGCAGCGC 366248 Query 27246 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 27305 |||| ||||||||| ||||| || |||||||||||||| | ||| | |||||| ||| Sbjct 366247 GTAGGAGGCGATGTTGAAGGGGACGCCGAGCCCCATGTCGCACGAGCGCTGGTACAGCAT 366188 Query 27306 ACACGAGAGCTC--TC-CATC---GCTTACGTAAAACTGACATATGGCGTGGCACGGAGG 27359 || || ||||| || | || | | ||||| |||||| | ||| || || || Sbjct 366187 GCAGGACAGCTCCTTCGCGTCCGTGTTCACGTAGAACTGAGCAAGCAAGTGACAGGGCGG 366128 Query 27360 AAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTC 27419 | ||||| | || | ||||||||||| | | || ||| | ||| | Sbjct 366127 CAACGCCATCTCGTGCAGCGCGCATGGGTTCCAGGCAGTTAACAGGAGGCGGCGGTCGTT 366068 Query 27420 TGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTA 27479 |||||| | ||||| |||||| | || | ||| |||||||| || ||| Sbjct 366067 TGGGTTCACCTTGATGGTCTCCACGATGGATTTGATCTGGTCCACCCCTTCGCCATCGTA 366008 Query 27480 GTCTACCCTC-ATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCG 27538 | | |||| | || |||||| ||||||||| || | ||| ||||| ||||| || | Sbjct 366007 AT-TCGCCTCAAACCCCTTGTACTGTGCTCCGAAGTGGCGCCACTGGAATCCGTAGACAG 365949 Query 27539 GTCCCAG----GTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTG 27594 | || || ||||| | ||| | || ||||| | |||| | ||| || | Sbjct 365948 GGCCGAGATCCATCTCCTTATTCGCCGT----CAAGCCGCGGCTGTCGAGAAACTCGCGC 365893 Query 27595 GAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGAC 27654 || ||||| | |||||||| | | |||| || | ||| | || |||||| Sbjct 365892 GAGCCGTTACCATCCCAGATGTGAATGTCCTTGTCCGCCAGCAACTGGGCGTTTGTTTCG 365833 Query 27655 CCTCTGACGAACCACAGCAGCTCCTC-CACGACGGCCTTCCAAAAGACCCTCTTGGTCGT 27713 || | | |||||||||||||||||| ||| ||| | ||| || || | ||| || || Sbjct 365832 CCGCGCAGGAACCACAGCAGCTCCTCGCAC-ACGCCGCGCCAGAAAACACGCTTCGTTGT 365774 Query 27714 GAGGAGGGG 27722 | ||| || Sbjct 365773 CAAGAGCGG 365765 >seq27 Length=1625307 Score = 93.3 bits (102), Expect = 3e-14 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48606 CCAGGAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCA 48665 ||||||||||||||||||| | ||||| || ||||| ||||||||||||||||| || Sbjct 72789 CCAGGAGGACATGCCCTTCAATCGCGACGGCGTCGTGCCGGACCTCATCATCAACCCGCA 72730 Query 48666 CGCCTTTCCCTCCAGGATGACCGT 48689 |||| |||||||| | ||||| || Sbjct 72729 CGCCATTCCCTCCCGCATGACAGT 72706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369507033375347