Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403695.1_202015-09-17] 37 sequences; 33,890,200 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq23 116 3e-21 seq22 111 1e-19 >seq23 Length=1220009 Score = 116 bits (128), Expect = 3e-21 Identities = 136/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 23021 GCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCG 23080 ||||| ||||| || |||||||||||| ||| || ||||||||||| |||||||| Sbjct 334746 GCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCA 334687 Query 23081 GTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCAC 23140 || || || || ||||| ||||| || | || ||||||| || | ||||| Sbjct 334686 GTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCAT 334627 Query 23141 GAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGC 23200 | ||||||||| || ||| ||||| ||||||||||| ||| ||||| | ||| || | Sbjct 334626 GCATCCTTGTACAGGATGAACGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAAC 334567 Query 23201 CACA 23204 |||| Sbjct 334566 CACA 334563 Score = 111 bits (122), Expect = 1e-19 Identities = 228/332 (69%), Gaps = 9/332 (3%) Strand=Plus/Minus Query 22453 GTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 ||||||||| | ||||||||| || || ||||| ||| || || || ||||| || Sbjct 335320 GTTCACCACAGGGAACTCGCCGCTCAGCACACGGCGGACGTATATATTCGAGGTGAAGGG 335261 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 ||||||| | || ||||| || || ||||| | ||| || ||||| ||||| || | || Sbjct 335260 TTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGACAC 335201 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTT--TGAAATTTTACTCTTGAGCATCGACCAGTCC 22630 ||| || ||||| | | ||| || ||| || | || ||||| | | ||||||| Sbjct 335200 CAGCAGTGAGTTGCGTATGCCTACCTGCATGACCTTCT-CT-TTGAGGCTGGCCCAGTCC 335143 Query 22631 CACAGATCGGA---CGGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTC 22687 || || || |||| | | || | |||||||||| | |||| | ||| || Sbjct 335142 CAGCGACCGCTGTTCGGCCGCGCGTTCTTCCACATATCGAACTGCAGAATGCCCTCGCTT 335083 Query 22688 GCCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGC-TCGC 22746 ||||||||||| | | | || |||||||| || | | || || || || | || Sbjct 335082 GCCGGGCTGCCCTTGAAGGTCTCGTACGGTCCCTCCTCCTTTGCGAGCTC-CATCGACGA 335024 Query 22747 CTCCAACGCGCCGTAATATATAGTCTCGAAGA 22778 ||| | |||| || | || || |||||||||| Sbjct 335023 CTCGACCGCGGCGAAGTAGATGGTCTCGAAGA 334992 Score = 100 bits (110), Expect = 3e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 23648 ATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCG 23707 |||| ||||| | ||||| || ||||||||||| ||||||||||| || || | ||| Sbjct 334119 ATCACGGCGCACTCCTTCAGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCC 334060 Query 23708 ACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTG 23767 |||| ||| ||||| |||||||| || || || | || ||| || || || | Sbjct 334059 ACCAGGAAGCACGAGCTCATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTA 334000 Query 23768 GCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCC 23827 ||||| || || | || ||||||| ||||||||||| || || | | | | Sbjct 333999 GCGTGGGTGAAAAAGCCCATCGACATCAGATTGTACGTCTCACGCACGTTGTTGA-GATC 333941 Query 23828 TCT-CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||| ||||| || || | |||||| ||||| | ||| | ||||| | ||| || Sbjct 333940 TCTGCCGTGGATGCCAAGGGCGACACGCATAAACATCTGCTGAGGCCGCTCCAC 333887 >seq22 Length=1195710 Score = 111 bits (122), Expect = 1e-19 Identities = 173/244 (71%), Gaps = 5/244 (2%) Strand=Plus/Minus Query 57993 GTCGAAGGTATATTCTTTTCGGGCAGCTT-TGCGGCAATATTTTGGATGAAGAAACGCGG 58051 || || || || |||||||| || ||| |||| | | || ||| ||||||| ||||| Sbjct 943292 GTGGAGGGCATCTTCTTTTCCGGATCCTTCTGCG-CGCTGTTCTGGCTGAAGAAGCGCGG 943234 Query 58052 CCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATAC 58111 |||||||| || ||||||| ||||||||| | || |||||||||||||| || || || Sbjct 943233 TCTGATGCCGGGGTTGACGTTCAGCAACGAGCTCATCTCGCGCGACGAGGGCCTACACAC 943174 Query 58112 TGATTTTGCGTGCCTAATGT---ACTCTCACATTGTCAATAAACCGACGCGGGATCGCAT 58168 || || ||||| || ||| |||| ||||| | |||| | |||| || ||| | Sbjct 943173 GGACTTCGCGTGTCTGCTGTACAACTCGCACATCAAGCACAAACTGCCGCGCGAGCGCGT 943114 Query 58169 CTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACC 58228 |||| || || || ||||| |||||| ||||| || ||| || || || Sbjct 943113 GCTGGAGATCATTGTGGATGCGGTGAACATCGAACGCGAGTTCATCTGCGACGCGCTTCC 943054 Query 58229 GGTG 58232 |||| Sbjct 943053 GGTG 943050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766193833040