Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403695.1_202015-09-17] 37 sequences; 33,890,200 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq23 192 1e-43 seq17 122 2e-22 >seq23 Length=1220009 Score = 192 bits (212), Expect = 1e-43 Identities = 816/1288 (63%), Gaps = 37/1288 (3%) Strand=Plus/Minus Query 243869 AGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGCTCTGCG-GCCATGGT 243927 ||||||||||| || || ||| |||||||| | | | | || || ||| |||||| Sbjct 335541 AGAAAGAGGTTCAGTGATTGGGACTGGTCGATGTATTGGCCGCGGTC-GCGTGCCATGTC 335483 Query 243928 GATGAGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGGCTTGAGGTGCTCGGG 243987 ||| | | ||| | ||||| || | ||| ||| | ||| |||| || || Sbjct 335482 GATCAACTTGCGCTGCGGGATCTCCCACACGGTCCGGTAAAGCTCCTTTAGGTCATCTGG 335423 Query 243988 GAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATC 244047 || || || ||||| | | ||| || |||| ||||| | | ||||||| | || Sbjct 335422 GATGCCGTCAATGTTGAGGATCGAACCATTGTAAGAGATGATTTCGTTGCGCATTTGCTC 335363 Query 244048 GTTCCACAGGCCCAAGCGCTCC-AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACT 244106 ||||||||||| | |||| || || ||| |||| | |||||||||| | |||| Sbjct 335362 ATTCCACAGGCC-ACGCGCGATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACT 335304 Query 244107 CTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGT 244166 | || |||||| ||||| ||| | || | ||| || |||| | ||| ||| Sbjct 335303 CGCCGCTCAGCACACGGCGGACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGT 335244 Query 244167 TGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCA 244226 |||| || ||||||| ||| ||| || |||||||| ||||||||||| ||| | | Sbjct 335243 TGCCGAGAATCTGCGAGGTGGACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTA 335184 Query 244227 CGCCGTGCCTCTGGATG-CGGAGTC--TGAGCTCGTTCCAGTCCCA-CATGCCCGAGAGG 244282 ||| | | ||| ||| | || |||| | ||||||||| | | | | Sbjct 335183 TGCC-TAC--CTGCATGACCTTCTCTTTGAGGCTGGCCCAGTCCCAGCGACCGCTGTTCG 335127 Query 244283 TCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCC 244342 || |||||| |||||| || |||||||| | |||| ||| | ||||||||| Sbjct 335126 GCCGCGCGTT----CTTCCACATATCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGCCC 335071 Query 244343 TCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGC-TCTCGTCGAGGGCGGC 244401 | | ||||| ||| || || || || || ||| | || | | |||| ||||| Sbjct 335070 TTGAAGGTCTCGTACGGTCCCTCCTCCTTTGCGAGC-TCCATCGACGACTCGACCGCGGC 335012 Query 244402 GTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCGCAGGTGAAGGG 244461 | |||||||||||||||||| | || Sbjct 335011 GAAGTAGATGGTCTCGAAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGG 334952 Query 244462 GATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTG 244521 | | ||| | || ||| ||| || || ||||| || || | |||||||| | || Sbjct 334951 CAGTCGCATGAGGATAAAGGTGTCAGCGAGGCCCTGTACACCAAGACCGATGGGACGGTT 334892 Query 244522 TCGCTTGTTGGAGCGCATGGCT-TCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGT 244580 ||| ||||| ||| ||| || | || ||||| |||||| ||| || || || Sbjct 334891 GCGCATGTTGCTGCGGCGCGCTGTCTCG-ACTGGGTAGTAGTTGCGGTCAATAACACGGT 334833 Query 244581 TGAGGTTGCGGGTGATCATGC--GGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTA 244638 | |||||||| |||||| ||| | | ||| || || ||||| || | ||||| Sbjct 334832 TTAGGTTGCGCGTGATC-TGCTTCGTC-ACGGCGTAGAGAAGCTGGTGGTTGAACTCGCG 334775 Query 244639 GGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCA 244698 || || ||| | || | || || |||| | ||| |||||||| Sbjct 334774 CTTTTCAACGTCGACG-----------AAGCGCG-GCAGCGCGATGGAGGCGAGGTTGCA 334727 Query 244699 GACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTT 244758 |||||| |||||||| ||||||| |||||| || ||||| ||||| |||||| Sbjct 334726 TACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATTTCAGTGCACAGGTTCGAGCACTT 334667 Query 244759 GATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAA 244818 ||| || || |||| || || || |||||| |||||| || |||||||| || ||||| Sbjct 334666 GATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTGCATGCATCCTTGTACAGGATGAA 334607 Query 244819 GGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGAC 244878 ||||| || ||||||| ||| | | |||| | ||| | ||| |||| || Sbjct 334606 CGGCCCGCCCGTCTCGATCTGAGACTCCAGGATGGCAAACCACACCTCCTGCGCCTGGAT 334547 Query 244879 CGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCC 244938 |||| || | | || || ||||||||||| Sbjct 334546 CGTCTTGACACCGCGTCCTTCCGCCTCGTAGCGCTNNNNNNNNNNNNNNNNNNNNNNNNN 334487 Query 244939 CCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGC-CGT 244997 | ||| ||||| ||||||| ||| ||| || ||||| |||| | | Sbjct 334486 NNNGCAGTCGCTGAGGCCCGGGCACGTGTTTGGGTCCATCAGCGTCCAC-CGCCCCTCAC 334428 Query 244998 CCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCC 245057 ||||| | || |||||| | ||| |||||||| | || | ||||||||| | || | Sbjct 334427 TTTTGACACGCTTCATGAACAAGTCCGGGATCCACAACGCGTAGAAGAGGTCACGGGCGC 334368 Query 245058 TCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCC 245117 ||| || ||| || ||||| | ||||| || || ||||||| ||| | |||| Sbjct 334367 GCTGGTCATCCTTTCCTGTGTTGCGCTTCAGCAACAGGAAACCAAAGACATCGGCATGCC 334308 Query 245118 AGGGCTCCATGTAGACAGCGAGGGCGCC 245145 ||||||| | ||||| |||| |||||| Sbjct 334307 AGGGCTCGAGATAGACGGCGAAGGCGCC 334280 >seq17 Length=693836 Score = 122 bits (134), Expect = 2e-22 Identities = 253/377 (67%), Gaps = 0/377 (0%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || |||| || |||||| || ||||||| || | || || || |||||| | Sbjct 521720 ATCCAGTACCACGATATCTGGCGCAAGTACAAGGAGCAGGAGAGCTGCATCTGGACGGTA 521661 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAG 42404 |||||||| ||||||| ||| |||| | | ||||| | | ||| || ||| | Sbjct 521660 GAGGAGATCGACCTGGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGG 521601 Query 42405 TTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAAC 42464 || |||| || | || ||||||||||||| |||||||| ||| ||||| Sbjct 521600 CACTTTATCAAGCACGTGCTTGCCTTCTTCGCCGGGAGCGACGGCATCGTCGTCGAGAAT 521541 Query 42465 CTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTC 42524 || ||| | ||||||| || ||| || ||||||||| |||||||| ||| Sbjct 521540 CTTGCCCAGCGTTTCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTC 521481 Query 42525 CAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATC 42584 ||| | || |||||| | ||||| ||| ||| | || || ||||||||||| Sbjct 521480 CAGCTGATGATGGAGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATC 521421 Query 42585 CTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAG 42644 || || ||| ||||| | | || || ||||||| || |||||| || Sbjct 521420 ACAGACAGCGAGGAGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAG 521361 Query 42645 AAGAAGGCGGACTGGGC 42661 ||||||||||| ||||| Sbjct 521360 AAGAAGGCGGAGTGGGC 521344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338763243120