Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403695.1_202015-09-17] 37 sequences; 33,890,200 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq23 185 8e-42 seq22 104 2e-17 seq31 98.7 1e-15 seq27 95.1 1e-14 seq36 86.0 6e-12 >seq23 Length=1220009 Score = 185 bits (204), Expect = 8e-42 Identities = 685/1072 (64%), Gaps = 30/1072 (3%) Strand=Plus/Minus Query 147939 GCAGCGGGTTGAGTGCGCAGATAGTACATGCCCGTCTTGAGGCCCATGCGCCATGCGTAG 147998 || |||| || |||||| |||||||| | || ||||| || || ||| ||||| Sbjct 335640 GCCGCGGCTTTAGTGCGTAGATAGTAGACACCAGTCTTCAGTCCAGCCTCCCAGCCGTAG 335581 Query 147999 TCGTGCACCGACGACATGAGCGTGTACGTCGGGTGCGGCACAAACAGATTAAACGACTGG 148058 | ||| |||| || | | || ||| | | | ||| || || | || ||| Sbjct 335580 AAGAGCATGGACGTGATCTGGCCAGAGGTGGGGCTCTGAAGAAAGAGGTTCAGTGATTGG 335521 Query 148059 CTCTGGTCAATGAACGCGCCACGGTCAGCG-GCCATTTCAATGAGTCGCTTTATCTTC-- 148115 |||||| ||| | ||| ||||| ||| ||||| || || | ||| || | Sbjct 335520 GACTGGTCGATGTATTGGCCGCGGTC-GCGTGCCATGTCGATCAA---CTTGCGCTGCGG 335465 Query 148116 -ATCTCCCAGGCCGTCTTGTACAGCCGCTTGATATGATCGGGAATGCCGTCGATGCGCTG 148174 |||||||| | ||| ||| ||| ||| | | ||| || |||||||| ||| | Sbjct 335464 GATCTCCCACACGGTCCGGTAAAGCTCCTTTAGGTCATCTGGGATGCCGTCAATGTTGAG 335405 Query 148175 CACCGAGCCGCGGTGCGCAAAAATCTGATTGCGCATTTCGTCCGTGTATAGGTTGAGCTC 148234 | ||| || || | | || | |||||||||| || | | ||| || | Sbjct 335404 GATCGAACCATTGTAAGAGATGATTTCGTTGCGCATTTGCTCATTCCACAGGCCACGCGC 335345 Query 148235 GATCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCG 148294 ||| ||||| || || |||| |||||||| | ||||||||| ||||| || || Sbjct 335344 GATGAGGTCCATGACGAGGTACTTGTTCACCACAGGGAACTCGCCGCTCAGCACACGGCG 335285 Query 148295 CAGATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGT 148354 | || | || || || ||||| || ||||||||||||| | |||||||| ||| Sbjct 335284 GACGTATATATTCGAGGTGAAGGGTTCGAAACACTCGTTGTTGCCGAGAATCTGCGAGGT 335225 Query 148355 CGTTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTT 148414 | || || |||||| | |||||||| |||||||| | || | | | || Sbjct 335224 GGACGCGGTTGGCATGGGGGACACCAGCAGTGAGTTGCGTATGCCTACCTGCATGACCTT 335165 Query 148415 GCGCTTCAGAGCC--GCCCAGTCCCAGAG--CGGCGA-CGGTGTCACGTTC---CACATG 148466 | ||| ||| | |||||||||||| | || | ||| | ||||| ||||| Sbjct 335164 -CTCTTT-GAGGCTGGCCCAGTCCCAGCGACCGCTGTTCGGCCGCGCGTTCTTCCACATA 335107 Query 148467 TCGTACTGCAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGC 148526 ||| ||||||||||||| ||| || |||||||||| | | | ||||||||| | | Sbjct 335106 TCGAACTGCAGAATGCCCTCGCTTGCCGGGCTGCCCTTGAAGGTCTCGTACGGTCCCTCC 335047 Query 148527 GCCGCCGCCAGTTCGCAGCT-CGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTG 148585 || || || || || | || ||||| |||| || |||| || |||||| | Sbjct 335046 TCCTTTGCGAGCTC-CATCGACGACTCGACCGCGGCGAAGTAGATGGTCTCGAAGANNNN 334988 Query 148586 CCTGTTGAGCAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTC 148645 |||||| |||| | | ||| | ||| Sbjct 334987 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACGGCAGTCGCATGAGGATAAAGGTGTC 334928 Query 148646 GGCAAGGCCCTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCT 148705 || ||||||||||| || | || ||||| |||| |||||| | ||||||| | Sbjct 334927 AGCGAGGCCCTGTACACCAAGACCGATGGGACGGTTGCGCATGTTGCTGCGGCGCGCTGT 334868 Query 148706 CTCGAGCGGATAGTGGTTGCGGTCGATGATCTTGTCAAGATTGCGCACCACCACCTTTGT 148765 ||||| || |||| ||||||||| || | || || |||||| | | ||| || Sbjct 334867 CTCGACTGGGTAGTAGTTGCGGTCAATAACACGGTTTAGGTTGCGCGTGATCTGCTTCGT 334808 Query 148766 AATTCTGCGCAGCAATTCA--------AAATCGTACTTGTCATCTACGATGCATCGGTTC 148817 | | ||| || | | || ||| ||| ||| | ||| | | || | Sbjct 334807 CA--CGGCGTAGAGAAGCTGGTGGTTGAACTCGCGCTTTTCAACGTCGACGAAGCGCGGC 334750 Query 148818 ACGGCGATAGAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATC 148877 | ||||| ||||| || ||||| ||||||||||| ||||| | ||||||| || || Sbjct 334749 AGCGCGATGGAGGCGAGGTTGCATACGGCCGTCTCCTCCGGCGACGTGTACTCGACAATT 334690 Query 148878 TCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTG 148937 || | |||||| || ||| |||||| || | |||||| || || |||||||||| Sbjct 334689 TCAGTGCACAGGTTCGAGCACTTGATCGTCCCAAGGTTCTTCTGGTTTGACTTGCTGTTG 334630 Query 148938 CACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCA 148989 || || ||||||||||| ||| |||| ||||| || || | ||| | |||| Sbjct 334629 CATGCATCCTTGTACAGGATGAACGGCCCGCCCGTCTCGATCTGAGACTCCA 334578 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 149463 AGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCAC 149522 ||||| ||||||||| |||||||||||| |||| | || ||| |||||||||| | Sbjct 334101 AGCGTATCGTAGATGCCGTCGATGCTGTCGTCCTTCGACGCCACCAGGAAGCACGAGCTC 334042 Query 149523 ATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTC 149582 |||||||| | ||||| || ||| | ||| || | ||||| || ||| | | Sbjct 334041 ATTTGCGGCTTCGGGGTGCCAGCGTTGAAGAGGGTTGGAGTAGCGTGGGTGAAAAAGCCC 333982 Query 149583 TGGCTCATCATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATG 149642 ||||| | ||||| ||| ||||| || | || ||| |||||||| | | Sbjct 333981 ATCGACATCAGATTGTACGTCTCACGCACGTTGTTGAGATCTCTGCCGTGGATGCCAAGG 333922 Query 149643 GCGACGCGCATCAGCATATGCTGCGGTCGCTCC 149675 ||||| ||||| | ||| ||||| || |||||| Sbjct 333921 GCGACACGCATAAACATCTGCTGAGGCCGCTCC 333889 >seq22 Length=1195710 Score = 104 bits (114), Expect = 2e-17 Identities = 183/264 (69%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 120511 GCGTTCATGCCCAGCAACGCCACCGGCAACGCCGACGT-GAAAAACTCCTTCTCAATGTC 120569 || |||||||| | || | |||||| | ||| | || || ||||| || |||| Sbjct 943030 GCATTCATGCCAATCAGCCGCACCGGAAGCGC-GTCGCAGATGAACTCGCGTTCGATGTT 943088 Query 120570 CACCGCCTCCTTGAACATGGCGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGT 120629 |||||| ||| | || | |||| | || |||| ||||| | |||| ||| Sbjct 943089 CACCGCATCCACAATGATCTCCAGCACGCGCTCGCGCGGCAGTTTGTGCTTGATGTGCGA 943148 Query 120630 TCGGTAGTACAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTT 120689 ||| ||| ||||| ||||||||||| ||||||||||||||||| || |||||||| Sbjct 943149 GTTGTACAGCAGACACGCGAAGTCCGTGTGTAGGCCCTCGTCGCGCGAGATGAGCTCGTT 943208 Query 120690 GCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCT 120749 ||| ||||||| || ||||| | || | |||| | |||| | ||| ||| Sbjct 943209 GCTGAACGTCAACCCCGGCATCAGACCGCGCTTCTTCAGCCAGAACAGCGCGCAGAAGGA 943268 Query 120750 GCCCGAAAAGAACACGCCCTCCAC 120773 || |||||||| | ||||||||| Sbjct 943269 TCCGGAAAAGAAGATGCCCTCCAC 943292 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||||||||| || ||||||| ||||| |||||||||| || ||| || | | Sbjct 942730 CTGGTACTCGCCCACCTTCCTCTCAAAGAAGTTCGTTTTGCCCTGCAGCGAGATCATCTC 942789 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 ||| || || || || | ||||||| ||| ||| || ||||| | || ||||| Sbjct 942790 CATGAAGTCAAAGGGCTGAGTCGCGTTGTAGTGCTTCTCCTCGCCCAGCGACACAAGCAG 942849 Query 120471 TCGGTCCGCTACAAACTCAATGTACT-CGCACATGGACTGCGCGTTCATGCCCAGCAACG 120529 |||||||| || ||||||||||||| ||| ||| || || |||||||| | || | Sbjct 942850 CCGGTCCGCGACGAACTCAATGTACTGCGC-CATCAGCTCGGCATTCATGCCAATCAGCC 942908 Query 120530 CCACCGGCAACGC 120542 |||||| | ||| Sbjct 942909 GCACCGGAAGCGC 942921 >seq31 Length=2885998 Score = 98.7 bits (108), Expect = 1e-15 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 133538 CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGT 133597 ||||||||| || |||||||| |||||||| |||||| ||| | | ||| | ||| Sbjct 1478014 CTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGT 1478073 Query 133598 GTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 |||| | |||||||| || | | || || ||||||||||| || || ||||| ||||| Sbjct 1478074 GTCGCTCGGCTCCACCTCCAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1478133 Query 133658 CATGGCT 133664 ||||||| Sbjct 1478134 CATGGCT 1478140 >seq27 Length=1656817 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133538 CTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCTCAACCGT 133597 ||||||||| || |||||||| |||||||| |||||| ||| | | ||| | ||| Sbjct 1129285 CTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGT 1129344 Query 133598 GTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAATCTG 133657 |||| | | |||||| |||| | || || ||||||||||| || || ||||| ||||| Sbjct 1129345 GTCGCTCGCCTCCACCTCGAGCGCGATCGTCTTGCCGGTCAGCGTCTTCACGAAGATCTG 1129404 Query 133658 CATGG 133662 ||||| Sbjct 1129405 CATGG 1129409 >seq36 Length=408297 Score = 86.0 bits (94), Expect = 6e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 19951 GCGCACGCGCACGTAGCCCTCCTCGCCGTAGTCGGCGCCCCACGAGTTTTTGATCGTCCA 20010 |||||||||||||||||||| |||||| ||| ||||||||||| |||||| ||| Sbjct 344981 GCGCACGCGCACGTAGCCCTTCTCGCCCCAGTTCTTACCCCACGAGTTCTTGATCAGCCA 345040 Query 20011 GTACGGCACGTTGTTCTCGACGCCGTAGCCCACGAGCAGCACCGCGTGGTTCAGC 20065 |||||| || | | | | ||| || ||||||||||| ||||||||||| Sbjct 345041 GTACGGAACCTCGCCAGTCATGTTGTACCCAACGAGCAGCACACCGTGGTTCAGC 345095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420576417880