Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Leishmania_20peruviana_20[genbank_20GCA_5F001403695.1_202015-09-17] 37 sequences; 33,890,200 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq17 170 3e-36 seq22 111 2e-18 seq27 87.8 3e-11 >seq17 Length=693836 Score = 170 bits (188), Expect = 3e-36 Identities = 301/436 (69%), Gaps = 2/436 (0%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 |||||||||| || || |||||| ||||| || || |||||||||| ||||| Sbjct 521765 GAGCCGCTGCAGCAGGAGAACCCGTTCCGCTACGTTCTCTTCCCCATCCAGTACCACGAT 521706 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| | |||| || || ||| || | | ||||| | |||||| ||||||| Sbjct 521705 ATCTGGCGCAAGTAC-AAGGAGCAGGAGAGCTGCATCTGGACGGTAGAGGAGATCGACCT 521647 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| ||||| | |||||||| |||||| ||||| || || || || |||||||| Sbjct 521646 GGGCAACGACATGAAGGACTGGGTGGCGCTGAACGACGGGGAACGGCACTTTATCAAGCA 521587 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCT 1455955 ||| || ||||| || ||||| ||||| |||||||| | |||||| || ||| || | Sbjct 521586 CGTGCTTGCCTTCTT-CGCCGGGAGCGACGGCATCGTCGTCGAGAATCTTGCCCAGCGTT 521528 Query 1455956 TTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCG 1456015 | |||| || || | |||| ||||| || ||| ||||| |||||| | || | Sbjct 521527 TCATGAGCGACGTGAAGGTGCCGGAGGCGCGCGCGTTCTACGGATTCCAGCTGATGATGG 521468 Query 1456016 AAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCG 1456075 | ||||||||||| || || ||||| | || | ||||| ||| ||| ||| | | Sbjct 521467 AGAACATCCACTCAGAGACATACTCTGTGCTACTGGACACGTACATCACAGACAGCGAGG 521408 Query 1456076 AGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACT 1456135 ||||| | || | | ||| ||| | ||| | || | | ||| ||||| || | Sbjct 521407 AGAAGCTGCGGCTGCTGCACGCGATCCAGACGATCCCATGCATCCAGAAGAAGGCGGAGT 521348 Query 1456136 GGGCGATGAAGTGGAT 1456151 |||| || |||||| Sbjct 521347 GGGCCGTGCGGTGGAT 521332 >seq22 Length=1195710 Score = 111 bits (122), Expect = 2e-18 Identities = 153/206 (74%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTT 1456628 |||| |||||| ||| || |||||||| ||| ||| ||| ||||||||||| || Sbjct 942920 CGCTTCCGGTGCGGCTGATTGGCATGAATGCCGA-GCTGATGGCGCAGTACATTGAGTTC 942862 Query 1456629 TGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGC-CAAC 1456687 ||||| ||||| ||||| | | |||| ||| | ||||||||||||| || | || | Sbjct 942861 -GTCGCGGACCGGCTGCTTGTGTCGCTGGGC-GAGGAGAAGCACTACAACGCGACTCAGC 942804 Query 1456688 CCGTTCCCATGGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGC 1456747 || || | | |||||| |||||||||| ||||||| || ||||| || ||| | Sbjct 942803 CCTTTGACTTC-ATGGAGATGATCTCGCTGCAGGGCAAAACGAACTTCTTTGAGAGGAAG 942745 Query 1456748 GTGG-CGAGTACGCCAAGGCCGGCGT 1456772 |||| ||||||| ||||||||||| Sbjct 942744 GTGGGCGAGTACCAGAAGGCCGGCGT 942719 >seq27 Length=1656817 Score = 87.8 bits (96), Expect = 3e-11 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 1601359 CTGCTTGCCCATGGCCGTCTGGTAGATGTTGCGCGGCGCCTGGTTGTGGTTGGAAAACGG 1601418 |||||| |||||||| | ||||||| |||||||||||| |||||||||||||| | || Sbjct 76701 CTGCTTACCCATGGCGGACTGGTAGGTGTTGCGCGGCGACTGGTTGTGGTTGGGGTAGGG 76760 Query 1601419 GATGATGGACGCGCAGGCGCCCAGCATGAGCAGCGGGTGGACCTCG 1601464 ||| ||||| ||||| ||| || || | | ||||| | |||| Sbjct 76761 GATAATGGAGGCGCAAATGCCAAGAATCATCGACGGGTCCATCTCG 76806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177807631281994